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dbVar

Database of genomic structural variation

nsv875214

Organism: Homo sapiens

Study:nstd71 (Xu et al. 2011)
Variant Type:copy number variation
Method Type:SNP array
Submitted on:NCBI36 (hg18)

Variant Calls:3
Validation:Not tested
Clinical Assertions: No
Region Size:65,799

Publication(s):Xu et al. 2011

Links to Other Resources

Overlapping Genes

Source: NCBI

Genome View
Variant Region Details and Evidence
Validation Information
Clinical Assertions
Genotype Information

Genome View

Select assembly:

Overlapping variant regions from other studies: 378 SVs from 62 studies. See in: genome view

Remapped(Score: Perfect):141,042,904-141,108,702

Variant Region Placement Information

Variant Region ID	Placement Type	Score	Assembly	Assembly Unit	Reciprocity	Sequence ID	Chr	Outer Start	Inner Start	Inner Stop	Outer Stop
nsv875214	Remapped	Perfect	GRCh38.p12	Primary Assembly	First Pass	NC_000002.12	Chr2	141,042,904	141,046,033	141,104,341	141,108,702
nsv875214	Remapped	Perfect	GRCh37.p13	Primary Assembly	First Pass	NC_000002.11	Chr2	141,800,473	141,803,602	141,861,910	141,866,271
nsv875214	Submitted genomic		NCBI36 (hg18)	Primary Assembly		NC_000002.10	Chr2	141,516,943	141,520,072	141,578,380	141,582,741

Variant Call Information

Variant Call ID	Type	Sample ID	Method	Analysis	Other Calls in this Sample and Study
nssv1566138	copy number loss	IS30597	SNP array	SNP genotyping analysis	66
nssv1569608	copy number loss	IS31651	SNP array	SNP genotyping analysis	26
nssv1579959	copy number loss	IS35196	SNP array	SNP genotyping analysis	28

Variant Call Placement Information

Variant Call ID	Placement Type	Score	HGVS	Assembly	Reciprocity	Sequence ID	Chr	Outer Start	Inner Start	Inner Stop	Outer Stop
nssv1566138	Remapped	Perfect	NC_000002.12:g.(14 1042904_141046033) _(141104341_141108 702)del	GRCh38.p12	First Pass	NC_000002.12	Chr2	141,042,904	141,046,033	141,104,341	141,108,702
nssv1569608	Remapped	Perfect	NC_000002.12:g.(14 1042904_141046033) _(141104341_141108 702)del	GRCh38.p12	First Pass	NC_000002.12	Chr2	141,042,904	141,046,033	141,104,341	141,108,702
nssv1579959	Remapped	Perfect	NC_000002.12:g.(14 1042904_141046033) _(141104341_141108 702)del	GRCh38.p12	First Pass	NC_000002.12	Chr2	141,042,904	141,046,033	141,104,341	141,108,702
nssv1566138	Remapped	Perfect	NC_000002.11:g.(14 1800473_141803602) _(141861910_141866 271)del	GRCh37.p13	First Pass	NC_000002.11	Chr2	141,800,473	141,803,602	141,861,910	141,866,271
nssv1569608	Remapped	Perfect	NC_000002.11:g.(14 1800473_141803602) _(141861910_141866 271)del	GRCh37.p13	First Pass	NC_000002.11	Chr2	141,800,473	141,803,602	141,861,910	141,866,271
nssv1579959	Remapped	Perfect	NC_000002.11:g.(14 1800473_141803602) _(141861910_141866 271)del	GRCh37.p13	First Pass	NC_000002.11	Chr2	141,800,473	141,803,602	141,861,910	141,866,271
nssv1566138	Submitted genomic		NC_000002.10:g.(14 1516943_141520072) _(141578380_141582 741)del	NCBI36 (hg18)		NC_000002.10	Chr2	141,516,943	141,520,072	141,578,380	141,582,741
nssv1569608	Submitted genomic		NC_000002.10:g.(14 1516943_141520072) _(141578380_141582 741)del	NCBI36 (hg18)		NC_000002.10	Chr2	141,516,943	141,520,072	141,578,380	141,582,741
nssv1579959	Submitted genomic		NC_000002.10:g.(14 1516943_141520072) _(141578380_141582 741)del	NCBI36 (hg18)		NC_000002.10	Chr2	141,516,943	141,520,072	141,578,380	141,582,741

No validation data were submitted for this variant

No clinical assertion data were submitted for this variant

No genotype data were submitted for this variant

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