nsv875403
- Organism: Homo sapiens
- Study:nstd71 (Xu et al. 2011)
- Variant Type:copy number variation
- Method Type:SNP array
- Submitted on:NCBI36 (hg18)
- Variant Calls:15
- Validation:Not tested
- Clinical Assertions: No
- Region Size:59,625
- Publication(s):Xu et al. 2011
Source: NCBI
- Genome View
- Variant Region Details and Evidence
- Validation Information
- Clinical Assertions
- Genotype Information
Genome View
Select assembly:Overlapping variant regions from other studies: 324 SVs from 57 studies. See in: genome view
Overlapping variant regions from other studies: 324 SVs from 57 studies. See in: genome view
Overlapping variant regions from other studies: 78 SVs from 14 studies. See in: genome view
Variant Region Placement Information
| Variant Region ID | Placement Type | Score | Assembly | Assembly Unit | Reciprocity | Sequence ID | Chr | Outer Start | Inner Start | Inner Stop | Outer Stop |
|---|---|---|---|---|---|---|---|---|---|---|---|
| nsv875403 | Remapped | Perfect | GRCh38.p12 | Primary Assembly | First Pass | NC_000002.12 | Chr2 | 169,486,573 | 169,487,550 | 169,533,679 | 169,546,197 |
| nsv875403 | Remapped | Perfect | GRCh37.p13 | Primary Assembly | First Pass | NC_000002.11 | Chr2 | 170,343,083 | 170,344,060 | 170,390,189 | 170,402,707 |
| nsv875403 | Submitted genomic | NCBI36 (hg18) | Primary Assembly | NC_000002.10 | Chr2 | 170,051,329 | 170,052,306 | 170,098,435 | 170,110,953 |
Variant Call Information
| Variant Call ID | Type | Sample ID | Method | Analysis | Other Calls in this Sample and Study |
|---|---|---|---|---|---|
| nssv1535545 | copy number loss | MS12266 | SNP array | SNP genotyping analysis | 58 |
| nssv1566075 | copy number loss | IS30589 | SNP array | SNP genotyping analysis | 13 |
| nssv1566329 | copy number loss | IS30667 | SNP array | SNP genotyping analysis | 35 |
| nssv1566385 | copy number loss | IS30683 | SNP array | SNP genotyping analysis | 19 |
| nssv1567587 | copy number loss | IS31123 | SNP array | SNP genotyping analysis | 37 |
| nssv1568243 | copy number loss | IS31225 | SNP array | SNP genotyping analysis | 13 |
| nssv1568658 | copy number loss | IS31330 | SNP array | SNP genotyping analysis | 66 |
| nssv1569493 | copy number loss | IS31587 | SNP array | SNP genotyping analysis | 24 |
| nssv1569775 | copy number loss | IS31706 | SNP array | SNP genotyping analysis | 29 |
| nssv1569863 | copy number loss | IS31729 | SNP array | SNP genotyping analysis | 60 |
| nssv1581960 | copy number loss | IS35771 | SNP array | SNP genotyping analysis | 78 |
| nssv1587477 | copy number loss | IS38057 | SNP array | SNP genotyping analysis | 19 |
| nssv1588549 | copy number loss | IS38216 | SNP array | SNP genotyping analysis | 15 |
| nssv1594277 | copy number loss | IS39759 | SNP array | SNP genotyping analysis | 18 |
| nssv1598711 | copy number loss | IS41166 | SNP array | SNP genotyping analysis | 14 |
Variant Call Placement Information
| Variant Call ID | Placement Type | Score | HGVS | Assembly | Reciprocity | Sequence ID | Chr | Outer Start | Inner Start | Inner Stop | Outer Stop |
|---|---|---|---|---|---|---|---|---|---|---|---|
| nssv1535545 | Remapped | Perfect | NC_000002.12:g.(16 9486573_169487550) _(169533679_169546 197)del | GRCh38.p12 | First Pass | NC_000002.12 | Chr2 | 169,486,573 | 169,487,550 | 169,533,679 | 169,546,197 |
| nssv1566075 | Remapped | Perfect | NC_000002.12:g.(16 9486573_169487550) _(169533679_169546 197)del | GRCh38.p12 | First Pass | NC_000002.12 | Chr2 | 169,486,573 | 169,487,550 | 169,533,679 | 169,546,197 |
| nssv1566329 | Remapped | Perfect | NC_000002.12:g.(16 9486573_169487550) _(169533679_169546 197)del | GRCh38.p12 | First Pass | NC_000002.12 | Chr2 | 169,486,573 | 169,487,550 | 169,533,679 | 169,546,197 |
| nssv1566385 | Remapped | Perfect | NC_000002.12:g.(16 9486573_169487550) _(169533679_169546 197)del | GRCh38.p12 | First Pass | NC_000002.12 | Chr2 | 169,486,573 | 169,487,550 | 169,533,679 | 169,546,197 |
| nssv1567587 | Remapped | Perfect | NC_000002.12:g.(16 9486573_169487550) _(169533679_169546 197)del | GRCh38.p12 | First Pass | NC_000002.12 | Chr2 | 169,486,573 | 169,487,550 | 169,533,679 | 169,546,197 |
| nssv1568243 | Remapped | Perfect | NC_000002.12:g.(16 9486573_169487550) _(169533679_169546 197)del | GRCh38.p12 | First Pass | NC_000002.12 | Chr2 | 169,486,573 | 169,487,550 | 169,533,679 | 169,546,197 |
| nssv1568658 | Remapped | Perfect | NC_000002.12:g.(16 9486573_169487550) _(169533679_169546 197)del | GRCh38.p12 | First Pass | NC_000002.12 | Chr2 | 169,486,573 | 169,487,550 | 169,533,679 | 169,546,197 |
| nssv1569493 | Remapped | Perfect | NC_000002.12:g.(16 9486573_169487550) _(169533679_169546 197)del | GRCh38.p12 | First Pass | NC_000002.12 | Chr2 | 169,486,573 | 169,487,550 | 169,533,679 | 169,546,197 |
| nssv1569775 | Remapped | Perfect | NC_000002.12:g.(16 9486573_169487550) _(169533679_169546 197)del | GRCh38.p12 | First Pass | NC_000002.12 | Chr2 | 169,486,573 | 169,487,550 | 169,533,679 | 169,546,197 |
| nssv1569863 | Remapped | Perfect | NC_000002.12:g.(16 9486573_169487550) _(169533679_169546 197)del | GRCh38.p12 | First Pass | NC_000002.12 | Chr2 | 169,486,573 | 169,487,550 | 169,533,679 | 169,546,197 |
| nssv1581960 | Remapped | Perfect | NC_000002.12:g.(16 9486573_169487550) _(169533679_169546 197)del | GRCh38.p12 | First Pass | NC_000002.12 | Chr2 | 169,486,573 | 169,487,550 | 169,533,679 | 169,546,197 |
| nssv1587477 | Remapped | Perfect | NC_000002.12:g.(16 9486573_169487550) _(169533679_169546 197)del | GRCh38.p12 | First Pass | NC_000002.12 | Chr2 | 169,486,573 | 169,487,550 | 169,533,679 | 169,546,197 |
| nssv1588549 | Remapped | Perfect | NC_000002.12:g.(16 9486573_169487550) _(169533679_169546 197)del | GRCh38.p12 | First Pass | NC_000002.12 | Chr2 | 169,486,573 | 169,487,550 | 169,533,679 | 169,546,197 |
| nssv1594277 | Remapped | Perfect | NC_000002.12:g.(16 9486573_169487550) _(169533679_169546 197)del | GRCh38.p12 | First Pass | NC_000002.12 | Chr2 | 169,486,573 | 169,487,550 | 169,533,679 | 169,546,197 |
| nssv1598711 | Remapped | Perfect | NC_000002.12:g.(16 9486573_169487550) _(169533679_169546 197)del | GRCh38.p12 | First Pass | NC_000002.12 | Chr2 | 169,486,573 | 169,487,550 | 169,533,679 | 169,546,197 |
| nssv1535545 | Remapped | Perfect | NC_000002.11:g.(17 0343083_170344060) _(170390189_170402 707)del | GRCh37.p13 | First Pass | NC_000002.11 | Chr2 | 170,343,083 | 170,344,060 | 170,390,189 | 170,402,707 |
| nssv1566075 | Remapped | Perfect | NC_000002.11:g.(17 0343083_170344060) _(170390189_170402 707)del | GRCh37.p13 | First Pass | NC_000002.11 | Chr2 | 170,343,083 | 170,344,060 | 170,390,189 | 170,402,707 |
| nssv1566329 | Remapped | Perfect | NC_000002.11:g.(17 0343083_170344060) _(170390189_170402 707)del | GRCh37.p13 | First Pass | NC_000002.11 | Chr2 | 170,343,083 | 170,344,060 | 170,390,189 | 170,402,707 |
| nssv1566385 | Remapped | Perfect | NC_000002.11:g.(17 0343083_170344060) _(170390189_170402 707)del | GRCh37.p13 | First Pass | NC_000002.11 | Chr2 | 170,343,083 | 170,344,060 | 170,390,189 | 170,402,707 |
| nssv1567587 | Remapped | Perfect | NC_000002.11:g.(17 0343083_170344060) _(170390189_170402 707)del | GRCh37.p13 | First Pass | NC_000002.11 | Chr2 | 170,343,083 | 170,344,060 | 170,390,189 | 170,402,707 |
| nssv1568243 | Remapped | Perfect | NC_000002.11:g.(17 0343083_170344060) _(170390189_170402 707)del | GRCh37.p13 | First Pass | NC_000002.11 | Chr2 | 170,343,083 | 170,344,060 | 170,390,189 | 170,402,707 |
| nssv1568658 | Remapped | Perfect | NC_000002.11:g.(17 0343083_170344060) _(170390189_170402 707)del | GRCh37.p13 | First Pass | NC_000002.11 | Chr2 | 170,343,083 | 170,344,060 | 170,390,189 | 170,402,707 |
| nssv1569493 | Remapped | Perfect | NC_000002.11:g.(17 0343083_170344060) _(170390189_170402 707)del | GRCh37.p13 | First Pass | NC_000002.11 | Chr2 | 170,343,083 | 170,344,060 | 170,390,189 | 170,402,707 |
| nssv1569775 | Remapped | Perfect | NC_000002.11:g.(17 0343083_170344060) _(170390189_170402 707)del | GRCh37.p13 | First Pass | NC_000002.11 | Chr2 | 170,343,083 | 170,344,060 | 170,390,189 | 170,402,707 |
| nssv1569863 | Remapped | Perfect | NC_000002.11:g.(17 0343083_170344060) _(170390189_170402 707)del | GRCh37.p13 | First Pass | NC_000002.11 | Chr2 | 170,343,083 | 170,344,060 | 170,390,189 | 170,402,707 |
| nssv1581960 | Remapped | Perfect | NC_000002.11:g.(17 0343083_170344060) _(170390189_170402 707)del | GRCh37.p13 | First Pass | NC_000002.11 | Chr2 | 170,343,083 | 170,344,060 | 170,390,189 | 170,402,707 |
| nssv1587477 | Remapped | Perfect | NC_000002.11:g.(17 0343083_170344060) _(170390189_170402 707)del | GRCh37.p13 | First Pass | NC_000002.11 | Chr2 | 170,343,083 | 170,344,060 | 170,390,189 | 170,402,707 |
| nssv1588549 | Remapped | Perfect | NC_000002.11:g.(17 0343083_170344060) _(170390189_170402 707)del | GRCh37.p13 | First Pass | NC_000002.11 | Chr2 | 170,343,083 | 170,344,060 | 170,390,189 | 170,402,707 |
| nssv1594277 | Remapped | Perfect | NC_000002.11:g.(17 0343083_170344060) _(170390189_170402 707)del | GRCh37.p13 | First Pass | NC_000002.11 | Chr2 | 170,343,083 | 170,344,060 | 170,390,189 | 170,402,707 |
| nssv1598711 | Remapped | Perfect | NC_000002.11:g.(17 0343083_170344060) _(170390189_170402 707)del | GRCh37.p13 | First Pass | NC_000002.11 | Chr2 | 170,343,083 | 170,344,060 | 170,390,189 | 170,402,707 |
| nssv1535545 | Submitted genomic | NC_000002.10:g.(17 0051329_170052306) _(170098435_170110 953)del | NCBI36 (hg18) | NC_000002.10 | Chr2 | 170,051,329 | 170,052,306 | 170,098,435 | 170,110,953 | ||
| nssv1566075 | Submitted genomic | NC_000002.10:g.(17 0051329_170052306) _(170098435_170110 953)del | NCBI36 (hg18) | NC_000002.10 | Chr2 | 170,051,329 | 170,052,306 | 170,098,435 | 170,110,953 | ||
| nssv1566329 | Submitted genomic | NC_000002.10:g.(17 0051329_170052306) _(170098435_170110 953)del | NCBI36 (hg18) | NC_000002.10 | Chr2 | 170,051,329 | 170,052,306 | 170,098,435 | 170,110,953 | ||
| nssv1566385 | Submitted genomic | NC_000002.10:g.(17 0051329_170052306) _(170098435_170110 953)del | NCBI36 (hg18) | NC_000002.10 | Chr2 | 170,051,329 | 170,052,306 | 170,098,435 | 170,110,953 | ||
| nssv1567587 | Submitted genomic | NC_000002.10:g.(17 0051329_170052306) _(170098435_170110 953)del | NCBI36 (hg18) | NC_000002.10 | Chr2 | 170,051,329 | 170,052,306 | 170,098,435 | 170,110,953 | ||
| nssv1568243 | Submitted genomic | NC_000002.10:g.(17 0051329_170052306) _(170098435_170110 953)del | NCBI36 (hg18) | NC_000002.10 | Chr2 | 170,051,329 | 170,052,306 | 170,098,435 | 170,110,953 | ||
| nssv1568658 | Submitted genomic | NC_000002.10:g.(17 0051329_170052306) _(170098435_170110 953)del | NCBI36 (hg18) | NC_000002.10 | Chr2 | 170,051,329 | 170,052,306 | 170,098,435 | 170,110,953 | ||
| nssv1569493 | Submitted genomic | NC_000002.10:g.(17 0051329_170052306) _(170098435_170110 953)del | NCBI36 (hg18) | NC_000002.10 | Chr2 | 170,051,329 | 170,052,306 | 170,098,435 | 170,110,953 | ||
| nssv1569775 | Submitted genomic | NC_000002.10:g.(17 0051329_170052306) _(170098435_170110 953)del | NCBI36 (hg18) | NC_000002.10 | Chr2 | 170,051,329 | 170,052,306 | 170,098,435 | 170,110,953 | ||
| nssv1569863 | Submitted genomic | NC_000002.10:g.(17 0051329_170052306) _(170098435_170110 953)del | NCBI36 (hg18) | NC_000002.10 | Chr2 | 170,051,329 | 170,052,306 | 170,098,435 | 170,110,953 | ||
| nssv1581960 | Submitted genomic | NC_000002.10:g.(17 0051329_170052306) _(170098435_170110 953)del | NCBI36 (hg18) | NC_000002.10 | Chr2 | 170,051,329 | 170,052,306 | 170,098,435 | 170,110,953 | ||
| nssv1587477 | Submitted genomic | NC_000002.10:g.(17 0051329_170052306) _(170098435_170110 953)del | NCBI36 (hg18) | NC_000002.10 | Chr2 | 170,051,329 | 170,052,306 | 170,098,435 | 170,110,953 | ||
| nssv1588549 | Submitted genomic | NC_000002.10:g.(17 0051329_170052306) _(170098435_170110 953)del | NCBI36 (hg18) | NC_000002.10 | Chr2 | 170,051,329 | 170,052,306 | 170,098,435 | 170,110,953 | ||
| nssv1594277 | Submitted genomic | NC_000002.10:g.(17 0051329_170052306) _(170098435_170110 953)del | NCBI36 (hg18) | NC_000002.10 | Chr2 | 170,051,329 | 170,052,306 | 170,098,435 | 170,110,953 | ||
| nssv1598711 | Submitted genomic | NC_000002.10:g.(17 0051329_170052306) _(170098435_170110 953)del | NCBI36 (hg18) | NC_000002.10 | Chr2 | 170,051,329 | 170,052,306 | 170,098,435 | 170,110,953 |