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dbVar

Database of genomic structural variation

nsv875651

Organism: Homo sapiens

Study:nstd71 (Xu et al. 2011)
Variant Type:copy number variation
Method Type:SNP array
Submitted on:NCBI36 (hg18)

Variant Calls:2
Validation:Not tested
Clinical Assertions: No
Region Size:206,941

Publication(s):Xu et al. 2011

Links to Other Resources

Overlapping Genes

Source: NCBI

Genome View
Variant Region Details and Evidence
Validation Information
Clinical Assertions
Genotype Information

Genome View

Select assembly:

Overlapping variant regions from other studies: 885 SVs from 87 studies. See in: genome view

Remapped(Score: Perfect):193,899,030-194,105,970

Variant Region Placement Information

Variant Region ID	Placement Type	Score	Assembly	Assembly Unit	Reciprocity	Sequence ID	Chr	Outer Start	Inner Start	Inner Stop	Outer Stop
nsv875651	Remapped	Perfect	GRCh38.p12	Primary Assembly	First Pass	NC_000002.12	Chr2	193,899,030	193,929,839	194,091,983	194,105,970
nsv875651	Remapped	Perfect	GRCh37.p13	Primary Assembly	First Pass	NC_000002.11	Chr2	194,763,754	194,794,563	194,956,707	194,970,694
nsv875651	Submitted genomic		NCBI36 (hg18)	Primary Assembly		NC_000002.10	Chr2	194,471,999	194,502,808	194,664,952	194,678,939

Variant Call Information

Variant Call ID	Type	Sample ID	Method	Analysis	Other Calls in this Sample and Study
nssv1567290	copy number loss	IS31067	SNP array	SNP genotyping analysis	66
nssv1570081	copy number gain	IS31799	SNP array	SNP genotyping analysis	23

Variant Call Placement Information

Variant Call ID	Placement Type	Score	HGVS	Assembly	Reciprocity	Sequence ID	Chr	Outer Start	Inner Start	Inner Stop	Outer Stop
nssv1567290	Remapped	Perfect	NC_000002.12:g.(19 3899030_193929839) _(194091983_194105 970)del	GRCh38.p12	First Pass	NC_000002.12	Chr2	193,899,030	193,929,839	194,091,983	194,105,970
nssv1570081	Remapped	Perfect	NC_000002.12:g.(19 3899030_193929839) _(194091983_194105 970)dup	GRCh38.p12	First Pass	NC_000002.12	Chr2	193,899,030	193,929,839	194,091,983	194,105,970
nssv1567290	Remapped	Perfect	NC_000002.11:g.(19 4763754_194794563) _(194956707_194970 694)del	GRCh37.p13	First Pass	NC_000002.11	Chr2	194,763,754	194,794,563	194,956,707	194,970,694
nssv1570081	Remapped	Perfect	NC_000002.11:g.(19 4763754_194794563) _(194956707_194970 694)dup	GRCh37.p13	First Pass	NC_000002.11	Chr2	194,763,754	194,794,563	194,956,707	194,970,694
nssv1567290	Submitted genomic		NC_000002.10:g.(19 4471999_194502808) _(194664952_194678 939)del	NCBI36 (hg18)		NC_000002.10	Chr2	194,471,999	194,502,808	194,664,952	194,678,939
nssv1570081	Submitted genomic		NC_000002.10:g.(19 4471999_194502808) _(194664952_194678 939)dup	NCBI36 (hg18)		NC_000002.10	Chr2	194,471,999	194,502,808	194,664,952	194,678,939

No validation data were submitted for this variant

No clinical assertion data were submitted for this variant

No genotype data were submitted for this variant

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