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dbVar

Database of genomic structural variation

nsv876428

Organism: Homo sapiens

Study:nstd71 (Xu et al. 2011)
Variant Type:copy number variation
Method Type:SNP array
Submitted on:NCBI36 (hg18)

Variant Calls:3
Validation:Not tested
Clinical Assertions: No
Region Size:110,600

Publication(s):Xu et al. 2011

Links to Other Resources

Overlapping Genes

Source: NCBI

Genome View
Variant Region Details and Evidence
Validation Information
Clinical Assertions
Genotype Information

Genome View

Select assembly:

Overlapping variant regions from other studies: 1326 SVs from 79 studies. See in: genome view

Remapped(Score: Perfect):4,029,467-4,140,066

Variant Region Placement Information

Variant Region ID	Placement Type	Score	Assembly	Assembly Unit	Reciprocity	Sequence ID	Chr	Outer Start	Inner Start	Inner Stop	Outer Stop
nsv876428	Remapped	Perfect	GRCh38.p12	Primary Assembly	First Pass	NC_000003.12	Chr3	4,029,467	4,032,349	4,129,190	4,140,066
nsv876428	Remapped	Perfect	GRCh37.p13	Primary Assembly	First Pass	NC_000003.11	Chr3	4,071,151	4,074,033	4,170,874	4,181,750
nsv876428	Submitted genomic		NCBI36 (hg18)	Primary Assembly		NC_000003.10	Chr3	4,046,151	4,049,033	4,145,874	4,156,750

Variant Call Information

Variant Call ID	Type	Sample ID	Method	Analysis	Other Calls in this Sample and Study
nssv1520474	copy number loss	SP51087	SNP array	SNP genotyping analysis	9
nssv1522249	copy number loss	SP52863	SNP array	SNP genotyping analysis	14
nssv1527292	copy number loss	SP58325	SNP array	SNP genotyping analysis	18

Variant Call Placement Information

Variant Call ID	Placement Type	Score	HGVS	Assembly	Reciprocity	Sequence ID	Chr	Outer Start	Inner Start	Inner Stop	Outer Stop
nssv1520474	Remapped	Perfect	NC_000003.12:g.(40 29467_4032349)_(41 29190_4140066)del	GRCh38.p12	First Pass	NC_000003.12	Chr3	4,029,467	4,032,349	4,129,190	4,140,066
nssv1522249	Remapped	Perfect	NC_000003.12:g.(40 29467_4032349)_(41 29190_4140066)del	GRCh38.p12	First Pass	NC_000003.12	Chr3	4,029,467	4,032,349	4,129,190	4,140,066
nssv1527292	Remapped	Perfect	NC_000003.12:g.(40 29467_4032349)_(41 29190_4140066)del	GRCh38.p12	First Pass	NC_000003.12	Chr3	4,029,467	4,032,349	4,129,190	4,140,066
nssv1520474	Remapped	Perfect	NC_000003.11:g.(40 71151_4074033)_(41 70874_4181750)del	GRCh37.p13	First Pass	NC_000003.11	Chr3	4,071,151	4,074,033	4,170,874	4,181,750
nssv1522249	Remapped	Perfect	NC_000003.11:g.(40 71151_4074033)_(41 70874_4181750)del	GRCh37.p13	First Pass	NC_000003.11	Chr3	4,071,151	4,074,033	4,170,874	4,181,750
nssv1527292	Remapped	Perfect	NC_000003.11:g.(40 71151_4074033)_(41 70874_4181750)del	GRCh37.p13	First Pass	NC_000003.11	Chr3	4,071,151	4,074,033	4,170,874	4,181,750
nssv1520474	Submitted genomic		NC_000003.10:g.(40 46151_4049033)_(41 45874_4156750)del	NCBI36 (hg18)		NC_000003.10	Chr3	4,046,151	4,049,033	4,145,874	4,156,750
nssv1522249	Submitted genomic		NC_000003.10:g.(40 46151_4049033)_(41 45874_4156750)del	NCBI36 (hg18)		NC_000003.10	Chr3	4,046,151	4,049,033	4,145,874	4,156,750
nssv1527292	Submitted genomic		NC_000003.10:g.(40 46151_4049033)_(41 45874_4156750)del	NCBI36 (hg18)		NC_000003.10	Chr3	4,046,151	4,049,033	4,145,874	4,156,750

No validation data were submitted for this variant

No clinical assertion data were submitted for this variant

No genotype data were submitted for this variant

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