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dbVar

Database of genomic structural variation

nsv876613

Organism: Homo sapiens

Study:nstd71 (Xu et al. 2011)
Variant Type:copy number variation
Method Type:SNP array
Submitted on:NCBI36 (hg18)

Variant Calls:3
Validation:Not tested
Clinical Assertions: No
Region Size:31,074

Publication(s):Xu et al. 2011

Links to Other Resources

Overlapping Genes

Source: NCBI

Genome View
Variant Region Details and Evidence
Validation Information
Clinical Assertions
Genotype Information

Genome View

Select assembly:

Overlapping variant regions from other studies: 198 SVs from 45 studies. See in: genome view

Remapped(Score: Perfect):21,752,682-21,783,755

Variant Region Placement Information

Variant Region ID	Placement Type	Score	Assembly	Assembly Unit	Reciprocity	Sequence ID	Chr	Outer Start	Inner Start	Inner Stop	Outer Stop
nsv876613	Remapped	Perfect	GRCh38.p12	Primary Assembly	First Pass	NC_000003.12	Chr3	21,752,682	21,754,976	21,779,494	21,783,755
nsv876613	Remapped	Perfect	GRCh37.p13	Primary Assembly	First Pass	NC_000003.11	Chr3	21,794,174	21,796,468	21,820,986	21,825,247
nsv876613	Submitted genomic		NCBI36 (hg18)	Primary Assembly		NC_000003.10	Chr3	21,769,178	21,771,472	21,795,990	21,800,251

Variant Call Information

Variant Call ID	Type	Sample ID	Method	Analysis	Other Calls in this Sample and Study
nssv1543930	copy number loss	MS16164	SNP array	SNP genotyping analysis	8
nssv1548921	copy number loss	MS17913	SNP array	SNP genotyping analysis	8
nssv1559564	copy number loss	MS24032	SNP array	SNP genotyping analysis	12

Variant Call Placement Information

Variant Call ID	Placement Type	Score	HGVS	Assembly	Reciprocity	Sequence ID	Chr	Outer Start	Inner Start	Inner Stop	Outer Stop
nssv1543930	Remapped	Perfect	NC_000003.12:g.(21 752682_21754976)_( 21779494_21783755) del	GRCh38.p12	First Pass	NC_000003.12	Chr3	21,752,682	21,754,976	21,779,494	21,783,755
nssv1548921	Remapped	Perfect	NC_000003.12:g.(21 752682_21754976)_( 21779494_21783755) del	GRCh38.p12	First Pass	NC_000003.12	Chr3	21,752,682	21,754,976	21,779,494	21,783,755
nssv1559564	Remapped	Perfect	NC_000003.12:g.(21 752682_21754976)_( 21779494_21783755) del	GRCh38.p12	First Pass	NC_000003.12	Chr3	21,752,682	21,754,976	21,779,494	21,783,755
nssv1543930	Remapped	Perfect	NC_000003.11:g.(21 794174_21796468)_( 21820986_21825247) del	GRCh37.p13	First Pass	NC_000003.11	Chr3	21,794,174	21,796,468	21,820,986	21,825,247
nssv1548921	Remapped	Perfect	NC_000003.11:g.(21 794174_21796468)_( 21820986_21825247) del	GRCh37.p13	First Pass	NC_000003.11	Chr3	21,794,174	21,796,468	21,820,986	21,825,247
nssv1559564	Remapped	Perfect	NC_000003.11:g.(21 794174_21796468)_( 21820986_21825247) del	GRCh37.p13	First Pass	NC_000003.11	Chr3	21,794,174	21,796,468	21,820,986	21,825,247
nssv1543930	Submitted genomic		NC_000003.10:g.(21 769178_21771472)_( 21795990_21800251) del	NCBI36 (hg18)		NC_000003.10	Chr3	21,769,178	21,771,472	21,795,990	21,800,251
nssv1548921	Submitted genomic		NC_000003.10:g.(21 769178_21771472)_( 21795990_21800251) del	NCBI36 (hg18)		NC_000003.10	Chr3	21,769,178	21,771,472	21,795,990	21,800,251
nssv1559564	Submitted genomic		NC_000003.10:g.(21 769178_21771472)_( 21795990_21800251) del	NCBI36 (hg18)		NC_000003.10	Chr3	21,769,178	21,771,472	21,795,990	21,800,251

No validation data were submitted for this variant

No clinical assertion data were submitted for this variant

No genotype data were submitted for this variant

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