nsv876700
- Organism: Homo sapiens
- Study:nstd71 (Xu et al. 2011)
- Variant Type:copy number variation
- Method Type:SNP array
- Submitted on:NCBI36 (hg18)
- Variant Calls:1
- Validation:Not tested
- Clinical Assertions: No
- Region Size:157,982
- Publication(s):Xu et al. 2011
Source: NCBI
- Genome View
- Variant Region Details and Evidence
- Validation Information
- Clinical Assertions
- Genotype Information
Genome View
Select assembly:Overlapping variant regions from other studies: 450 SVs from 59 studies. See in: genome view
Overlapping variant regions from other studies: 450 SVs from 59 studies. See in: genome view
Overlapping variant regions from other studies: 112 SVs from 15 studies. See in: genome view
Variant Region Placement Information
| Variant Region ID | Placement Type | Score | Assembly | Assembly Unit | Reciprocity | Sequence ID | Chr | Outer Start | Inner Start | Inner Stop | Outer Stop |
|---|---|---|---|---|---|---|---|---|---|---|---|
| nsv876700 | Remapped | Perfect | GRCh38.p12 | Primary Assembly | First Pass | NC_000003.12 | Chr3 | 36,384,044 | 36,387,992 | 36,521,597 | 36,542,025 |
| nsv876700 | Remapped | Perfect | GRCh37.p13 | Primary Assembly | First Pass | NC_000003.11 | Chr3 | 36,425,536 | 36,429,484 | 36,563,089 | 36,583,517 |
| nsv876700 | Submitted genomic | NCBI36 (hg18) | Primary Assembly | NC_000003.10 | Chr3 | 36,400,540 | 36,404,488 | 36,538,093 | 36,558,521 |
Variant Call Information
| Variant Call ID | Type | Sample ID | Method | Analysis | Other Calls in this Sample and Study |
|---|---|---|---|---|---|
| nssv1556188 | copy number loss | MS21857 | SNP array | SNP genotyping analysis | 14 |
Variant Call Placement Information
| Variant Call ID | Placement Type | Score | HGVS | Assembly | Reciprocity | Sequence ID | Chr | Outer Start | Inner Start | Inner Stop | Outer Stop |
|---|---|---|---|---|---|---|---|---|---|---|---|
| nssv1556188 | Remapped | Perfect | NC_000003.12:g.(36 384044_36387992)_( 36521597_36542025) del | GRCh38.p12 | First Pass | NC_000003.12 | Chr3 | 36,384,044 | 36,387,992 | 36,521,597 | 36,542,025 |
| nssv1556188 | Remapped | Perfect | NC_000003.11:g.(36 425536_36429484)_( 36563089_36583517) del | GRCh37.p13 | First Pass | NC_000003.11 | Chr3 | 36,425,536 | 36,429,484 | 36,563,089 | 36,583,517 |
| nssv1556188 | Submitted genomic | NC_000003.10:g.(36 400540_36404488)_( 36538093_36558521) del | NCBI36 (hg18) | NC_000003.10 | Chr3 | 36,400,540 | 36,404,488 | 36,538,093 | 36,558,521 |