nsv876975
- Organism: Homo sapiens
- Study:nstd71 (Xu et al. 2011)
- Variant Type:copy number variation
- Method Type:SNP array
- Submitted on:NCBI36 (hg18)
- Variant Calls:1
- Validation:Not tested
- Clinical Assertions: No
- Region Size:141,606
- Publication(s):Xu et al. 2011
Source: NCBI
- Genome View
- Variant Region Details and Evidence
- Validation Information
- Clinical Assertions
- Genotype Information
Genome View
Select assembly:Overlapping variant regions from other studies: 1226 SVs from 94 studies. See in: genome view
Overlapping variant regions from other studies: 1226 SVs from 94 studies. See in: genome view
Overlapping variant regions from other studies: 514 SVs from 27 studies. See in: genome view
Variant Region Placement Information
| Variant Region ID | Placement Type | Score | Assembly | Assembly Unit | Reciprocity | Sequence ID | Chr | Outer Start | Inner Start | Inner Stop | Outer Stop |
|---|---|---|---|---|---|---|---|---|---|---|---|
| nsv876975 | Remapped | Perfect | GRCh38.p12 | Primary Assembly | First Pass | NC_000003.12 | Chr3 | 75,370,585 | 75,379,524 | 75,500,011 | 75,512,190 |
| nsv876975 | Remapped | Perfect | GRCh37.p13 | Primary Assembly | First Pass | NC_000003.11 | Chr3 | 75,419,736 | 75,428,675 | 75,549,162 | 75,561,341 |
| nsv876975 | Submitted genomic | NCBI36 (hg18) | Primary Assembly | NC_000003.10 | Chr3 | 75,502,426 | 75,511,365 | 75,631,852 | 75,644,031 |
Variant Call Information
| Variant Call ID | Type | Sample ID | Method | Analysis | Other Calls in this Sample and Study |
|---|---|---|---|---|---|
| nssv1559973 | copy number loss | MS24245 | SNP array | SNP genotyping analysis | 11 |
Variant Call Placement Information
| Variant Call ID | Placement Type | Score | HGVS | Assembly | Reciprocity | Sequence ID | Chr | Outer Start | Inner Start | Inner Stop | Outer Stop |
|---|---|---|---|---|---|---|---|---|---|---|---|
| nssv1559973 | Remapped | Perfect | NC_000003.12:g.(75 370585_75379524)_( 75500011_75512190) del | GRCh38.p12 | First Pass | NC_000003.12 | Chr3 | 75,370,585 | 75,379,524 | 75,500,011 | 75,512,190 |
| nssv1559973 | Remapped | Perfect | NC_000003.11:g.(75 419736_75428675)_( 75549162_75561341) del | GRCh37.p13 | First Pass | NC_000003.11 | Chr3 | 75,419,736 | 75,428,675 | 75,549,162 | 75,561,341 |
| nssv1559973 | Submitted genomic | NC_000003.10:g.(75 502426_75511365)_( 75631852_75644031) del | NCBI36 (hg18) | NC_000003.10 | Chr3 | 75,502,426 | 75,511,365 | 75,631,852 | 75,644,031 |