nsv877048
- Organism: Homo sapiens
- Study:nstd71 (Xu et al. 2011)
- Variant Type:copy number variation
- Method Type:SNP array
- Submitted on:NCBI36 (hg18)
- Variant Calls:1
- Validation:Not tested
- Clinical Assertions: No
- Region Size:455,095
- Publication(s):Xu et al. 2011
Source: NCBI
- Genome View
- Variant Region Details and Evidence
- Validation Information
- Clinical Assertions
- Genotype Information
Genome View
Select assembly:Overlapping variant regions from other studies: 1623 SVs from 97 studies. See in: genome view
Overlapping variant regions from other studies: 1623 SVs from 97 studies. See in: genome view
Overlapping variant regions from other studies: 464 SVs from 26 studies. See in: genome view
Variant Region Placement Information
| Variant Region ID | Placement Type | Score | Assembly | Assembly Unit | Reciprocity | Sequence ID | Chr | Outer Start | Inner Start | Inner Stop | Outer Stop |
|---|---|---|---|---|---|---|---|---|---|---|---|
| nsv877048 | Remapped | Perfect | GRCh38.p12 | Primary Assembly | First Pass | NC_000003.12 | Chr3 | 82,819,938 | 82,824,453 | 83,223,140 | 83,275,032 |
| nsv877048 | Remapped | Perfect | GRCh37.p13 | Primary Assembly | First Pass | NC_000003.11 | Chr3 | 82,869,089 | 82,873,604 | 83,272,291 | 83,324,183 |
| nsv877048 | Submitted genomic | NCBI36 (hg18) | Primary Assembly | NC_000003.10 | Chr3 | 82,951,779 | 82,956,294 | 83,354,981 | 83,406,873 |
Variant Call Information
| Variant Call ID | Type | Sample ID | Method | Analysis | Other Calls in this Sample and Study |
|---|---|---|---|---|---|
| nssv1582318 | copy number loss | IS35911 | SNP array | SNP genotyping analysis | 89 |
Variant Call Placement Information
| Variant Call ID | Placement Type | Score | HGVS | Assembly | Reciprocity | Sequence ID | Chr | Outer Start | Inner Start | Inner Stop | Outer Stop |
|---|---|---|---|---|---|---|---|---|---|---|---|
| nssv1582318 | Remapped | Perfect | NC_000003.12:g.(82 819938_82824453)_( 83223140_83275032) del | GRCh38.p12 | First Pass | NC_000003.12 | Chr3 | 82,819,938 | 82,824,453 | 83,223,140 | 83,275,032 |
| nssv1582318 | Remapped | Perfect | NC_000003.11:g.(82 869089_82873604)_( 83272291_83324183) del | GRCh37.p13 | First Pass | NC_000003.11 | Chr3 | 82,869,089 | 82,873,604 | 83,272,291 | 83,324,183 |
| nssv1582318 | Submitted genomic | NC_000003.10:g.(82 951779_82956294)_( 83354981_83406873) del | NCBI36 (hg18) | NC_000003.10 | Chr3 | 82,951,779 | 82,956,294 | 83,354,981 | 83,406,873 |