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dbVar

Database of genomic structural variation

nsv877220

Organism: Homo sapiens

Study:nstd71 (Xu et al. 2011)
Variant Type:copy number variation
Method Type:SNP array
Submitted on:NCBI36 (hg18)

Variant Calls:6
Validation:Not tested
Clinical Assertions: No
Region Size:142,577

Publication(s):Xu et al. 2011

Links to Other Resources

Overlapping Genes

Source: NCBI

Genome View
Variant Region Details and Evidence
Validation Information
Clinical Assertions
Genotype Information

Genome View

Select assembly:

Overlapping variant regions from other studies: 611 SVs from 71 studies. See in: genome view

Remapped(Score: Perfect):100,605,598-100,748,174

Variant Region Placement Information

Variant Region ID	Placement Type	Score	Assembly	Assembly Unit	Reciprocity	Sequence ID	Chr	Outer Start	Inner Start	Inner Stop	Outer Stop
nsv877220	Remapped	Perfect	GRCh38.p12	Primary Assembly	First Pass	NC_000003.12	Chr3	100,605,598	100,631,901	100,714,748	100,748,174
nsv877220	Remapped	Perfect	GRCh37.p13	Primary Assembly	First Pass	NC_000003.11	Chr3	100,324,442	100,350,745	100,433,592	100,467,018
nsv877220	Submitted genomic		NCBI36 (hg18)	Primary Assembly		NC_000003.10	Chr3	101,807,132	101,833,435	101,916,282	101,949,708

Variant Call Information

Variant Call ID	Type	Sample ID	Method	Analysis	Other Calls in this Sample and Study
nssv1534071	copy number gain	MS11451	SNP array	SNP genotyping analysis	16
nssv1564402	copy number gain	IS30206	SNP array	SNP genotyping analysis	18
nssv1584522	copy number gain	IS37060	SNP array	SNP genotyping analysis	10
nssv1585590	copy number gain	IS37554	SNP array	SNP genotyping analysis	10
nssv1590390	copy number gain	IS38504	SNP array	SNP genotyping analysis	10
nssv1591388	copy number gain	IS38743	SNP array	SNP genotyping analysis	9

Variant Call Placement Information

Variant Call ID	Placement Type	Score	HGVS	Assembly	Reciprocity	Sequence ID	Chr	Outer Start	Inner Start	Inner Stop	Outer Stop
nssv1534071	Remapped	Perfect	NC_000003.12:g.(10 0605598_100631901) _(100714748_100748 174)dup	GRCh38.p12	First Pass	NC_000003.12	Chr3	100,605,598	100,631,901	100,714,748	100,748,174
nssv1564402	Remapped	Perfect	NC_000003.12:g.(10 0605598_100631901) _(100714748_100748 174)dup	GRCh38.p12	First Pass	NC_000003.12	Chr3	100,605,598	100,631,901	100,714,748	100,748,174
nssv1584522	Remapped	Perfect	NC_000003.12:g.(10 0605598_100631901) _(100714748_100748 174)dup	GRCh38.p12	First Pass	NC_000003.12	Chr3	100,605,598	100,631,901	100,714,748	100,748,174
nssv1585590	Remapped	Perfect	NC_000003.12:g.(10 0605598_100631901) _(100714748_100748 174)dup	GRCh38.p12	First Pass	NC_000003.12	Chr3	100,605,598	100,631,901	100,714,748	100,748,174
nssv1590390	Remapped	Perfect	NC_000003.12:g.(10 0605598_100631901) _(100714748_100748 174)dup	GRCh38.p12	First Pass	NC_000003.12	Chr3	100,605,598	100,631,901	100,714,748	100,748,174
nssv1591388	Remapped	Perfect	NC_000003.12:g.(10 0605598_100631901) _(100714748_100748 174)dup	GRCh38.p12	First Pass	NC_000003.12	Chr3	100,605,598	100,631,901	100,714,748	100,748,174
nssv1534071	Remapped	Perfect	NC_000003.11:g.(10 0324442_100350745) _(100433592_100467 018)dup	GRCh37.p13	First Pass	NC_000003.11	Chr3	100,324,442	100,350,745	100,433,592	100,467,018
nssv1564402	Remapped	Perfect	NC_000003.11:g.(10 0324442_100350745) _(100433592_100467 018)dup	GRCh37.p13	First Pass	NC_000003.11	Chr3	100,324,442	100,350,745	100,433,592	100,467,018
nssv1584522	Remapped	Perfect	NC_000003.11:g.(10 0324442_100350745) _(100433592_100467 018)dup	GRCh37.p13	First Pass	NC_000003.11	Chr3	100,324,442	100,350,745	100,433,592	100,467,018
nssv1585590	Remapped	Perfect	NC_000003.11:g.(10 0324442_100350745) _(100433592_100467 018)dup	GRCh37.p13	First Pass	NC_000003.11	Chr3	100,324,442	100,350,745	100,433,592	100,467,018
nssv1590390	Remapped	Perfect	NC_000003.11:g.(10 0324442_100350745) _(100433592_100467 018)dup	GRCh37.p13	First Pass	NC_000003.11	Chr3	100,324,442	100,350,745	100,433,592	100,467,018
nssv1591388	Remapped	Perfect	NC_000003.11:g.(10 0324442_100350745) _(100433592_100467 018)dup	GRCh37.p13	First Pass	NC_000003.11	Chr3	100,324,442	100,350,745	100,433,592	100,467,018
nssv1534071	Submitted genomic		NC_000003.10:g.(10 1807132_101833435) _(101916282_101949 708)dup	NCBI36 (hg18)		NC_000003.10	Chr3	101,807,132	101,833,435	101,916,282	101,949,708
nssv1564402	Submitted genomic		NC_000003.10:g.(10 1807132_101833435) _(101916282_101949 708)dup	NCBI36 (hg18)		NC_000003.10	Chr3	101,807,132	101,833,435	101,916,282	101,949,708
nssv1584522	Submitted genomic		NC_000003.10:g.(10 1807132_101833435) _(101916282_101949 708)dup	NCBI36 (hg18)		NC_000003.10	Chr3	101,807,132	101,833,435	101,916,282	101,949,708
nssv1585590	Submitted genomic		NC_000003.10:g.(10 1807132_101833435) _(101916282_101949 708)dup	NCBI36 (hg18)		NC_000003.10	Chr3	101,807,132	101,833,435	101,916,282	101,949,708
nssv1590390	Submitted genomic		NC_000003.10:g.(10 1807132_101833435) _(101916282_101949 708)dup	NCBI36 (hg18)		NC_000003.10	Chr3	101,807,132	101,833,435	101,916,282	101,949,708
nssv1591388	Submitted genomic		NC_000003.10:g.(10 1807132_101833435) _(101916282_101949 708)dup	NCBI36 (hg18)		NC_000003.10	Chr3	101,807,132	101,833,435	101,916,282	101,949,708

No validation data were submitted for this variant

No clinical assertion data were submitted for this variant

No genotype data were submitted for this variant

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