nsv877653
- Organism: Homo sapiens
- Study:nstd71 (Xu et al. 2011)
- Variant Type:copy number variation
- Method Type:SNP array
- Submitted on:NCBI36 (hg18)
- Variant Calls:7
- Validation:Not tested
- Clinical Assertions: No
- Region Size:43,665
- Publication(s):Xu et al. 2011
Source: NCBI
- Genome View
- Variant Region Details and Evidence
- Validation Information
- Clinical Assertions
- Genotype Information
Genome View
Select assembly:Overlapping variant regions from other studies: 472 SVs from 74 studies. See in: genome view
Overlapping variant regions from other studies: 472 SVs from 74 studies. See in: genome view
Overlapping variant regions from other studies: 158 SVs from 23 studies. See in: genome view
Variant Region Placement Information
| Variant Region ID | Placement Type | Score | Assembly | Assembly Unit | Reciprocity | Sequence ID | Chr | Outer Start | Inner Start | Inner Stop | Outer Stop |
|---|---|---|---|---|---|---|---|---|---|---|---|
| nsv877653 | Remapped | Perfect | GRCh38.p12 | Primary Assembly | First Pass | NC_000003.12 | Chr3 | 151,793,297 | 151,796,802 | 151,828,253 | 151,836,961 |
| nsv877653 | Remapped | Perfect | GRCh37.p13 | Primary Assembly | First Pass | NC_000003.11 | Chr3 | 151,511,085 | 151,514,590 | 151,546,041 | 151,554,749 |
| nsv877653 | Submitted genomic | NCBI36 (hg18) | Primary Assembly | NC_000003.10 | Chr3 | 152,993,775 | 152,997,280 | 153,028,731 | 153,037,439 |
Variant Call Information
| Variant Call ID | Type | Sample ID | Method | Analysis | Other Calls in this Sample and Study |
|---|---|---|---|---|---|
| nssv1531521 | copy number loss | MS10517 | SNP array | SNP genotyping analysis | 11 |
| nssv1583104 | copy number loss | IS36258 | SNP array | SNP genotyping analysis | 9 |
| nssv1586247 | copy number loss | IS37704 | SNP array | SNP genotyping analysis | 12 |
| nssv1590077 | copy number loss | IS38457 | SNP array | SNP genotyping analysis | 12 |
| nssv1595573 | copy number loss | IS40267 | SNP array | SNP genotyping analysis | 12 |
| nssv1596146 | copy number loss | IS40416 | SNP array | SNP genotyping analysis | 19 |
| nssv1596906 | copy number loss | IS40665 | SNP array | SNP genotyping analysis | 10 |
Variant Call Placement Information
| Variant Call ID | Placement Type | Score | HGVS | Assembly | Reciprocity | Sequence ID | Chr | Outer Start | Inner Start | Inner Stop | Outer Stop |
|---|---|---|---|---|---|---|---|---|---|---|---|
| nssv1531521 | Remapped | Perfect | NC_000003.12:g.(15 1793297_151796802) _(151828253_151836 961)del | GRCh38.p12 | First Pass | NC_000003.12 | Chr3 | 151,793,297 | 151,796,802 | 151,828,253 | 151,836,961 |
| nssv1583104 | Remapped | Perfect | NC_000003.12:g.(15 1793297_151796802) _(151828253_151836 961)del | GRCh38.p12 | First Pass | NC_000003.12 | Chr3 | 151,793,297 | 151,796,802 | 151,828,253 | 151,836,961 |
| nssv1586247 | Remapped | Perfect | NC_000003.12:g.(15 1793297_151796802) _(151828253_151836 961)del | GRCh38.p12 | First Pass | NC_000003.12 | Chr3 | 151,793,297 | 151,796,802 | 151,828,253 | 151,836,961 |
| nssv1590077 | Remapped | Perfect | NC_000003.12:g.(15 1793297_151796802) _(151828253_151836 961)del | GRCh38.p12 | First Pass | NC_000003.12 | Chr3 | 151,793,297 | 151,796,802 | 151,828,253 | 151,836,961 |
| nssv1595573 | Remapped | Perfect | NC_000003.12:g.(15 1793297_151796802) _(151828253_151836 961)del | GRCh38.p12 | First Pass | NC_000003.12 | Chr3 | 151,793,297 | 151,796,802 | 151,828,253 | 151,836,961 |
| nssv1596146 | Remapped | Perfect | NC_000003.12:g.(15 1793297_151796802) _(151828253_151836 961)del | GRCh38.p12 | First Pass | NC_000003.12 | Chr3 | 151,793,297 | 151,796,802 | 151,828,253 | 151,836,961 |
| nssv1596906 | Remapped | Perfect | NC_000003.12:g.(15 1793297_151796802) _(151828253_151836 961)del | GRCh38.p12 | First Pass | NC_000003.12 | Chr3 | 151,793,297 | 151,796,802 | 151,828,253 | 151,836,961 |
| nssv1531521 | Remapped | Perfect | NC_000003.11:g.(15 1511085_151514590) _(151546041_151554 749)del | GRCh37.p13 | First Pass | NC_000003.11 | Chr3 | 151,511,085 | 151,514,590 | 151,546,041 | 151,554,749 |
| nssv1583104 | Remapped | Perfect | NC_000003.11:g.(15 1511085_151514590) _(151546041_151554 749)del | GRCh37.p13 | First Pass | NC_000003.11 | Chr3 | 151,511,085 | 151,514,590 | 151,546,041 | 151,554,749 |
| nssv1586247 | Remapped | Perfect | NC_000003.11:g.(15 1511085_151514590) _(151546041_151554 749)del | GRCh37.p13 | First Pass | NC_000003.11 | Chr3 | 151,511,085 | 151,514,590 | 151,546,041 | 151,554,749 |
| nssv1590077 | Remapped | Perfect | NC_000003.11:g.(15 1511085_151514590) _(151546041_151554 749)del | GRCh37.p13 | First Pass | NC_000003.11 | Chr3 | 151,511,085 | 151,514,590 | 151,546,041 | 151,554,749 |
| nssv1595573 | Remapped | Perfect | NC_000003.11:g.(15 1511085_151514590) _(151546041_151554 749)del | GRCh37.p13 | First Pass | NC_000003.11 | Chr3 | 151,511,085 | 151,514,590 | 151,546,041 | 151,554,749 |
| nssv1596146 | Remapped | Perfect | NC_000003.11:g.(15 1511085_151514590) _(151546041_151554 749)del | GRCh37.p13 | First Pass | NC_000003.11 | Chr3 | 151,511,085 | 151,514,590 | 151,546,041 | 151,554,749 |
| nssv1596906 | Remapped | Perfect | NC_000003.11:g.(15 1511085_151514590) _(151546041_151554 749)del | GRCh37.p13 | First Pass | NC_000003.11 | Chr3 | 151,511,085 | 151,514,590 | 151,546,041 | 151,554,749 |
| nssv1531521 | Submitted genomic | NC_000003.10:g.(15 2993775_152997280) _(153028731_153037 439)del | NCBI36 (hg18) | NC_000003.10 | Chr3 | 152,993,775 | 152,997,280 | 153,028,731 | 153,037,439 | ||
| nssv1583104 | Submitted genomic | NC_000003.10:g.(15 2993775_152997280) _(153028731_153037 439)del | NCBI36 (hg18) | NC_000003.10 | Chr3 | 152,993,775 | 152,997,280 | 153,028,731 | 153,037,439 | ||
| nssv1586247 | Submitted genomic | NC_000003.10:g.(15 2993775_152997280) _(153028731_153037 439)del | NCBI36 (hg18) | NC_000003.10 | Chr3 | 152,993,775 | 152,997,280 | 153,028,731 | 153,037,439 | ||
| nssv1590077 | Submitted genomic | NC_000003.10:g.(15 2993775_152997280) _(153028731_153037 439)del | NCBI36 (hg18) | NC_000003.10 | Chr3 | 152,993,775 | 152,997,280 | 153,028,731 | 153,037,439 | ||
| nssv1595573 | Submitted genomic | NC_000003.10:g.(15 2993775_152997280) _(153028731_153037 439)del | NCBI36 (hg18) | NC_000003.10 | Chr3 | 152,993,775 | 152,997,280 | 153,028,731 | 153,037,439 | ||
| nssv1596146 | Submitted genomic | NC_000003.10:g.(15 2993775_152997280) _(153028731_153037 439)del | NCBI36 (hg18) | NC_000003.10 | Chr3 | 152,993,775 | 152,997,280 | 153,028,731 | 153,037,439 | ||
| nssv1596906 | Submitted genomic | NC_000003.10:g.(15 2993775_152997280) _(153028731_153037 439)del | NCBI36 (hg18) | NC_000003.10 | Chr3 | 152,993,775 | 152,997,280 | 153,028,731 | 153,037,439 |