nsv877667
- Organism: Homo sapiens
- Study:nstd71 (Xu et al. 2011)
- Variant Type:copy number variation
- Method Type:SNP array
- Submitted on:NCBI36 (hg18)
- Variant Calls:6
- Validation:Not tested
- Clinical Assertions: No
- Region Size:22,559
- Publication(s):Xu et al. 2011
Source: NCBI
- Genome View
- Variant Region Details and Evidence
- Validation Information
- Clinical Assertions
- Genotype Information
Genome View
Select assembly:Overlapping variant regions from other studies: 184 SVs from 38 studies. See in: genome view
Overlapping variant regions from other studies: 184 SVs from 38 studies. See in: genome view
Overlapping variant regions from other studies: 46 SVs from 16 studies. See in: genome view
Variant Region Placement Information
| Variant Region ID | Placement Type | Score | Assembly | Assembly Unit | Reciprocity | Sequence ID | Chr | Outer Start | Inner Start | Inner Stop | Outer Stop |
|---|---|---|---|---|---|---|---|---|---|---|---|
| nsv877667 | Remapped | Perfect | GRCh38.p12 | Primary Assembly | First Pass | NC_000003.12 | Chr3 | 153,388,123 | 153,399,099 | 153,407,691 | 153,410,681 |
| nsv877667 | Remapped | Perfect | GRCh37.p13 | Primary Assembly | First Pass | NC_000003.11 | Chr3 | 153,105,912 | 153,116,888 | 153,125,480 | 153,128,470 |
| nsv877667 | Submitted genomic | NCBI36 (hg18) | Primary Assembly | NC_000003.10 | Chr3 | 154,588,602 | 154,599,578 | 154,608,170 | 154,611,160 |
Variant Call Information
| Variant Call ID | Type | Sample ID | Method | Analysis | Other Calls in this Sample and Study |
|---|---|---|---|---|---|
| nssv1551283 | copy number loss | MS18847 | SNP array | SNP genotyping analysis | 113 |
| nssv1551721 | copy number loss | MS18978 | SNP array | SNP genotyping analysis | 145 |
| nssv1570237 | copy number loss | IS31837 | SNP array | SNP genotyping analysis | 34 |
| nssv1575861 | copy number loss | IS33832 | SNP array | SNP genotyping analysis | 20 |
| nssv1575902 | copy number loss | IS33839 | SNP array | SNP genotyping analysis | 63 |
| nssv1582925 | copy number loss | IS36219 | SNP array | SNP genotyping analysis | 125 |
Variant Call Placement Information
| Variant Call ID | Placement Type | Score | HGVS | Assembly | Reciprocity | Sequence ID | Chr | Outer Start | Inner Start | Inner Stop | Outer Stop |
|---|---|---|---|---|---|---|---|---|---|---|---|
| nssv1551283 | Remapped | Perfect | NC_000003.12:g.(15 3388123_153399099) _(153407691_153410 681)del | GRCh38.p12 | First Pass | NC_000003.12 | Chr3 | 153,388,123 | 153,399,099 | 153,407,691 | 153,410,681 |
| nssv1551721 | Remapped | Perfect | NC_000003.12:g.(15 3388123_153399099) _(153407691_153410 681)del | GRCh38.p12 | First Pass | NC_000003.12 | Chr3 | 153,388,123 | 153,399,099 | 153,407,691 | 153,410,681 |
| nssv1570237 | Remapped | Perfect | NC_000003.12:g.(15 3388123_153399099) _(153407691_153410 681)del | GRCh38.p12 | First Pass | NC_000003.12 | Chr3 | 153,388,123 | 153,399,099 | 153,407,691 | 153,410,681 |
| nssv1575861 | Remapped | Perfect | NC_000003.12:g.(15 3388123_153399099) _(153407691_153410 681)del | GRCh38.p12 | First Pass | NC_000003.12 | Chr3 | 153,388,123 | 153,399,099 | 153,407,691 | 153,410,681 |
| nssv1575902 | Remapped | Perfect | NC_000003.12:g.(15 3388123_153399099) _(153407691_153410 681)del | GRCh38.p12 | First Pass | NC_000003.12 | Chr3 | 153,388,123 | 153,399,099 | 153,407,691 | 153,410,681 |
| nssv1582925 | Remapped | Perfect | NC_000003.12:g.(15 3388123_153399099) _(153407691_153410 681)del | GRCh38.p12 | First Pass | NC_000003.12 | Chr3 | 153,388,123 | 153,399,099 | 153,407,691 | 153,410,681 |
| nssv1551283 | Remapped | Perfect | NC_000003.11:g.(15 3105912_153116888) _(153125480_153128 470)del | GRCh37.p13 | First Pass | NC_000003.11 | Chr3 | 153,105,912 | 153,116,888 | 153,125,480 | 153,128,470 |
| nssv1551721 | Remapped | Perfect | NC_000003.11:g.(15 3105912_153116888) _(153125480_153128 470)del | GRCh37.p13 | First Pass | NC_000003.11 | Chr3 | 153,105,912 | 153,116,888 | 153,125,480 | 153,128,470 |
| nssv1570237 | Remapped | Perfect | NC_000003.11:g.(15 3105912_153116888) _(153125480_153128 470)del | GRCh37.p13 | First Pass | NC_000003.11 | Chr3 | 153,105,912 | 153,116,888 | 153,125,480 | 153,128,470 |
| nssv1575861 | Remapped | Perfect | NC_000003.11:g.(15 3105912_153116888) _(153125480_153128 470)del | GRCh37.p13 | First Pass | NC_000003.11 | Chr3 | 153,105,912 | 153,116,888 | 153,125,480 | 153,128,470 |
| nssv1575902 | Remapped | Perfect | NC_000003.11:g.(15 3105912_153116888) _(153125480_153128 470)del | GRCh37.p13 | First Pass | NC_000003.11 | Chr3 | 153,105,912 | 153,116,888 | 153,125,480 | 153,128,470 |
| nssv1582925 | Remapped | Perfect | NC_000003.11:g.(15 3105912_153116888) _(153125480_153128 470)del | GRCh37.p13 | First Pass | NC_000003.11 | Chr3 | 153,105,912 | 153,116,888 | 153,125,480 | 153,128,470 |
| nssv1551283 | Submitted genomic | NC_000003.10:g.(15 4588602_154599578) _(154608170_154611 160)del | NCBI36 (hg18) | NC_000003.10 | Chr3 | 154,588,602 | 154,599,578 | 154,608,170 | 154,611,160 | ||
| nssv1551721 | Submitted genomic | NC_000003.10:g.(15 4588602_154599578) _(154608170_154611 160)del | NCBI36 (hg18) | NC_000003.10 | Chr3 | 154,588,602 | 154,599,578 | 154,608,170 | 154,611,160 | ||
| nssv1570237 | Submitted genomic | NC_000003.10:g.(15 4588602_154599578) _(154608170_154611 160)del | NCBI36 (hg18) | NC_000003.10 | Chr3 | 154,588,602 | 154,599,578 | 154,608,170 | 154,611,160 | ||
| nssv1575861 | Submitted genomic | NC_000003.10:g.(15 4588602_154599578) _(154608170_154611 160)del | NCBI36 (hg18) | NC_000003.10 | Chr3 | 154,588,602 | 154,599,578 | 154,608,170 | 154,611,160 | ||
| nssv1575902 | Submitted genomic | NC_000003.10:g.(15 4588602_154599578) _(154608170_154611 160)del | NCBI36 (hg18) | NC_000003.10 | Chr3 | 154,588,602 | 154,599,578 | 154,608,170 | 154,611,160 | ||
| nssv1582925 | Submitted genomic | NC_000003.10:g.(15 4588602_154599578) _(154608170_154611 160)del | NCBI36 (hg18) | NC_000003.10 | Chr3 | 154,588,602 | 154,599,578 | 154,608,170 | 154,611,160 |