nsv877728
- Organism: Homo sapiens
- Study:nstd71 (Xu et al. 2011)
- Variant Type:copy number variation
- Method Type:SNP array
- Submitted on:NCBI36 (hg18)
- Variant Calls:1
- Validation:Not tested
- Clinical Assertions: No
- Region Size:151,066
- Publication(s):Xu et al. 2011
Source: NCBI
- Genome View
- Variant Region Details and Evidence
- Validation Information
- Clinical Assertions
- Genotype Information
Genome View
Select assembly:Overlapping variant regions from other studies: 984 SVs from 85 studies. See in: genome view
Overlapping variant regions from other studies: 984 SVs from 85 studies. See in: genome view
Overlapping variant regions from other studies: 366 SVs from 28 studies. See in: genome view
Variant Region Placement Information
| Variant Region ID | Placement Type | Score | Assembly | Assembly Unit | Reciprocity | Sequence ID | Chr | Outer Start | Inner Start | Inner Stop | Outer Stop |
|---|---|---|---|---|---|---|---|---|---|---|---|
| nsv877728 | Remapped | Perfect | GRCh38.p12 | Primary Assembly | First Pass | NC_000003.12 | Chr3 | 162,368,032 | 162,370,911 | 162,511,796 | 162,519,097 |
| nsv877728 | Remapped | Perfect | GRCh37.p13 | Primary Assembly | First Pass | NC_000003.11 | Chr3 | 162,085,820 | 162,088,699 | 162,229,584 | 162,236,885 |
| nsv877728 | Submitted genomic | NCBI36 (hg18) | Primary Assembly | NC_000003.10 | Chr3 | 163,568,514 | 163,571,393 | 163,712,278 | 163,719,579 |
Variant Call Information
| Variant Call ID | Type | Sample ID | Method | Analysis | Other Calls in this Sample and Study |
|---|---|---|---|---|---|
| nssv1536507 | copy number loss | MS12827 | SNP array | SNP genotyping analysis | 60 |
Variant Call Placement Information
| Variant Call ID | Placement Type | Score | HGVS | Assembly | Reciprocity | Sequence ID | Chr | Outer Start | Inner Start | Inner Stop | Outer Stop |
|---|---|---|---|---|---|---|---|---|---|---|---|
| nssv1536507 | Remapped | Perfect | NC_000003.12:g.(16 2368032_162370911) _(162511796_162519 097)del | GRCh38.p12 | First Pass | NC_000003.12 | Chr3 | 162,368,032 | 162,370,911 | 162,511,796 | 162,519,097 |
| nssv1536507 | Remapped | Perfect | NC_000003.11:g.(16 2085820_162088699) _(162229584_162236 885)del | GRCh37.p13 | First Pass | NC_000003.11 | Chr3 | 162,085,820 | 162,088,699 | 162,229,584 | 162,236,885 |
| nssv1536507 | Submitted genomic | NC_000003.10:g.(16 3568514_163571393) _(163712278_163719 579)del | NCBI36 (hg18) | NC_000003.10 | Chr3 | 163,568,514 | 163,571,393 | 163,712,278 | 163,719,579 |