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dbVar

Database of genomic structural variation

nsv877886

Organism: Homo sapiens

Study:nstd71 (Xu et al. 2011)
Variant Type:copy number variation
Method Type:SNP array
Submitted on:NCBI36 (hg18)

Variant Calls:2
Validation:Not tested
Clinical Assertions: No
Region Size:185,250

Publication(s):Xu et al. 2011

Links to Other Resources

Overlapping Genes

Source: NCBI

Genome View
Variant Region Details and Evidence
Validation Information
Clinical Assertions
Genotype Information

Genome View

Select assembly:

Overlapping variant regions from other studies: 720 SVs from 61 studies. See in: genome view

Remapped(Score: Perfect):164,223,765-164,409,014

Variant Region Placement Information

Variant Region ID	Placement Type	Score	Assembly	Assembly Unit	Reciprocity	Sequence ID	Chr	Outer Start	Inner Start	Inner Stop	Outer Stop
nsv877886	Remapped	Perfect	GRCh38.p12	Primary Assembly	First Pass	NC_000003.12	Chr3	164,223,765	164,240,854	164,396,765	164,409,014
nsv877886	Remapped	Perfect	GRCh37.p13	Primary Assembly	First Pass	NC_000003.11	Chr3	163,941,553	163,958,642	164,114,553	164,126,802
nsv877886	Submitted genomic		NCBI36 (hg18)	Primary Assembly		NC_000003.10	Chr3	165,424,247	165,441,336	165,597,247	165,609,496

Variant Call Information

Variant Call ID	Type	Sample ID	Method	Analysis	Other Calls in this Sample and Study
nssv1575862	copy number loss	IS33832	SNP array	SNP genotyping analysis	20
nssv1581882	copy number loss	IS35743	SNP array	SNP genotyping analysis	35

Variant Call Placement Information

Variant Call ID	Placement Type	Score	HGVS	Assembly	Reciprocity	Sequence ID	Chr	Outer Start	Inner Start	Inner Stop	Outer Stop
nssv1575862	Remapped	Perfect	NC_000003.12:g.(16 4223765_164240854) _(164396765_164409 014)del	GRCh38.p12	First Pass	NC_000003.12	Chr3	164,223,765	164,240,854	164,396,765	164,409,014
nssv1581882	Remapped	Perfect	NC_000003.12:g.(16 4223765_164240854) _(164396765_164409 014)del	GRCh38.p12	First Pass	NC_000003.12	Chr3	164,223,765	164,240,854	164,396,765	164,409,014
nssv1575862	Remapped	Perfect	NC_000003.11:g.(16 3941553_163958642) _(164114553_164126 802)del	GRCh37.p13	First Pass	NC_000003.11	Chr3	163,941,553	163,958,642	164,114,553	164,126,802
nssv1581882	Remapped	Perfect	NC_000003.11:g.(16 3941553_163958642) _(164114553_164126 802)del	GRCh37.p13	First Pass	NC_000003.11	Chr3	163,941,553	163,958,642	164,114,553	164,126,802
nssv1575862	Submitted genomic		NC_000003.10:g.(16 5424247_165441336) _(165597247_165609 496)del	NCBI36 (hg18)		NC_000003.10	Chr3	165,424,247	165,441,336	165,597,247	165,609,496
nssv1581882	Submitted genomic		NC_000003.10:g.(16 5424247_165441336) _(165597247_165609 496)del	NCBI36 (hg18)		NC_000003.10	Chr3	165,424,247	165,441,336	165,597,247	165,609,496

No validation data were submitted for this variant

No clinical assertion data were submitted for this variant

No genotype data were submitted for this variant

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