nsv877910
- Organism: Homo sapiens
- Study:nstd71 (Xu et al. 2011)
- Variant Type:copy number variation
- Method Type:SNP array
- Submitted on:NCBI36 (hg18)
- Variant Calls:1
- Validation:Not tested
- Clinical Assertions: No
- Region Size:128,087
- Publication(s):Xu et al. 2011
Source: NCBI
- Genome View
- Variant Region Details and Evidence
- Validation Information
- Clinical Assertions
- Genotype Information
Genome View
Select assembly:Overlapping variant regions from other studies: 534 SVs from 74 studies. See in: genome view
Overlapping variant regions from other studies: 534 SVs from 74 studies. See in: genome view
Overlapping variant regions from other studies: 153 SVs from 24 studies. See in: genome view
Variant Region Placement Information
| Variant Region ID | Placement Type | Score | Assembly | Assembly Unit | Reciprocity | Sequence ID | Chr | Outer Start | Inner Start | Inner Stop | Outer Stop |
|---|---|---|---|---|---|---|---|---|---|---|---|
| nsv877910 | Remapped | Perfect | GRCh38.p12 | Primary Assembly | First Pass | NC_000003.12 | Chr3 | 165,208,817 | 165,223,261 | 165,331,163 | 165,336,903 |
| nsv877910 | Remapped | Perfect | GRCh37.p13 | Primary Assembly | First Pass | NC_000003.11 | Chr3 | 164,926,605 | 164,941,049 | 165,048,951 | 165,054,691 |
| nsv877910 | Submitted genomic | NCBI36 (hg18) | Primary Assembly | NC_000003.10 | Chr3 | 166,409,299 | 166,423,743 | 166,531,645 | 166,537,385 |
Variant Call Information
| Variant Call ID | Type | Sample ID | Method | Analysis | Other Calls in this Sample and Study |
|---|---|---|---|---|---|
| nssv1569247 | copy number loss | IS31554 | SNP array | SNP genotyping analysis | 56 |
Variant Call Placement Information
| Variant Call ID | Placement Type | Score | HGVS | Assembly | Reciprocity | Sequence ID | Chr | Outer Start | Inner Start | Inner Stop | Outer Stop |
|---|---|---|---|---|---|---|---|---|---|---|---|
| nssv1569247 | Remapped | Perfect | NC_000003.12:g.(16 5208817_165223261) _(165331163_165336 903)del | GRCh38.p12 | First Pass | NC_000003.12 | Chr3 | 165,208,817 | 165,223,261 | 165,331,163 | 165,336,903 |
| nssv1569247 | Remapped | Perfect | NC_000003.11:g.(16 4926605_164941049) _(165048951_165054 691)del | GRCh37.p13 | First Pass | NC_000003.11 | Chr3 | 164,926,605 | 164,941,049 | 165,048,951 | 165,054,691 |
| nssv1569247 | Submitted genomic | NC_000003.10:g.(16 6409299_166423743) _(166531645_166537 385)del | NCBI36 (hg18) | NC_000003.10 | Chr3 | 166,409,299 | 166,423,743 | 166,531,645 | 166,537,385 |