nsv877918
- Organism: Homo sapiens
- Study:nstd71 (Xu et al. 2011)
- Variant Type:copy number variation
- Method Type:SNP array
- Submitted on:NCBI36 (hg18)
- Variant Calls:1
- Validation:Not tested
- Clinical Assertions: No
- Region Size:103,356
- Publication(s):Xu et al. 2011
Source: NCBI
- Genome View
- Variant Region Details and Evidence
- Validation Information
- Clinical Assertions
- Genotype Information
Genome View
Select assembly:Overlapping variant regions from other studies: 537 SVs from 74 studies. See in: genome view
Overlapping variant regions from other studies: 537 SVs from 74 studies. See in: genome view
Overlapping variant regions from other studies: 155 SVs from 23 studies. See in: genome view
Variant Region Placement Information
| Variant Region ID | Placement Type | Score | Assembly | Assembly Unit | Reciprocity | Sequence ID | Chr | Outer Start | Inner Start | Inner Stop | Outer Stop |
|---|---|---|---|---|---|---|---|---|---|---|---|
| nsv877918 | Remapped | Perfect | GRCh38.p12 | Primary Assembly | First Pass | NC_000003.12 | Chr3 | 165,308,891 | 165,324,003 | 165,401,197 | 165,412,246 |
| nsv877918 | Remapped | Perfect | GRCh37.p13 | Primary Assembly | First Pass | NC_000003.11 | Chr3 | 165,026,679 | 165,041,791 | 165,118,985 | 165,130,034 |
| nsv877918 | Submitted genomic | NCBI36 (hg18) | Primary Assembly | NC_000003.10 | Chr3 | 166,509,373 | 166,524,485 | 166,601,679 | 166,612,728 |
Variant Call Information
| Variant Call ID | Type | Sample ID | Method | Analysis | Other Calls in this Sample and Study |
|---|---|---|---|---|---|
| nssv1536510 | copy number loss | MS12827 | SNP array | SNP genotyping analysis | 60 |
Variant Call Placement Information
| Variant Call ID | Placement Type | Score | HGVS | Assembly | Reciprocity | Sequence ID | Chr | Outer Start | Inner Start | Inner Stop | Outer Stop |
|---|---|---|---|---|---|---|---|---|---|---|---|
| nssv1536510 | Remapped | Perfect | NC_000003.12:g.(16 5308891_165324003) _(165401197_165412 246)del | GRCh38.p12 | First Pass | NC_000003.12 | Chr3 | 165,308,891 | 165,324,003 | 165,401,197 | 165,412,246 |
| nssv1536510 | Remapped | Perfect | NC_000003.11:g.(16 5026679_165041791) _(165118985_165130 034)del | GRCh37.p13 | First Pass | NC_000003.11 | Chr3 | 165,026,679 | 165,041,791 | 165,118,985 | 165,130,034 |
| nssv1536510 | Submitted genomic | NC_000003.10:g.(16 6509373_166524485) _(166601679_166612 728)del | NCBI36 (hg18) | NC_000003.10 | Chr3 | 166,509,373 | 166,524,485 | 166,601,679 | 166,612,728 |