nsv877941
- Organism: Homo sapiens
- Study:nstd71 (Xu et al. 2011)
- Variant Type:copy number variation
- Method Type:SNP array
- Submitted on:NCBI36 (hg18)
- Variant Calls:8
- Validation:Not tested
- Clinical Assertions: No
- Region Size:106,018
- Publication(s):Xu et al. 2011
Source: NCBI
- Genome View
- Variant Region Details and Evidence
- Validation Information
- Clinical Assertions
- Genotype Information
Genome View
Select assembly:Overlapping variant regions from other studies: 499 SVs from 63 studies. See in: genome view
Overlapping variant regions from other studies: 499 SVs from 63 studies. See in: genome view
Overlapping variant regions from other studies: 142 SVs from 18 studies. See in: genome view
Variant Region Placement Information
| Variant Region ID | Placement Type | Score | Assembly | Assembly Unit | Reciprocity | Sequence ID | Chr | Outer Start | Inner Start | Inner Stop | Outer Stop |
|---|---|---|---|---|---|---|---|---|---|---|---|
| nsv877941 | Remapped | Perfect | GRCh38.p12 | Primary Assembly | First Pass | NC_000003.12 | Chr3 | 165,782,372 | 165,787,389 | 165,877,359 | 165,888,389 |
| nsv877941 | Remapped | Perfect | GRCh37.p13 | Primary Assembly | First Pass | NC_000003.11 | Chr3 | 165,500,160 | 165,505,177 | 165,595,147 | 165,606,177 |
| nsv877941 | Submitted genomic | NCBI36 (hg18) | Primary Assembly | NC_000003.10 | Chr3 | 166,982,854 | 166,987,871 | 167,077,841 | 167,088,871 |
Variant Call Information
| Variant Call ID | Type | Sample ID | Method | Analysis | Other Calls in this Sample and Study |
|---|---|---|---|---|---|
| nssv1556247 | copy number loss | MS21868 | SNP array | SNP genotyping analysis | 44 |
| nssv1557351 | copy number loss | MS22619 | SNP array | SNP genotyping analysis | 11 |
| nssv1572201 | copy number loss | IS32891 | SNP array | SNP genotyping analysis | 36 |
| nssv1575437 | copy number loss | IS33747 | SNP array | SNP genotyping analysis | 43 |
| nssv1577416 | copy number loss | IS34440 | SNP array | SNP genotyping analysis | 34 |
| nssv1578556 | copy number loss | IS34805 | SNP array | SNP genotyping analysis | 28 |
| nssv1596741 | copy number loss | IS40627 | SNP array | SNP genotyping analysis | 34 |
| nssv1599859 | copy number loss | IS41803 | SNP array | SNP genotyping analysis | 20 |
Variant Call Placement Information
| Variant Call ID | Placement Type | Score | HGVS | Assembly | Reciprocity | Sequence ID | Chr | Outer Start | Inner Start | Inner Stop | Outer Stop |
|---|---|---|---|---|---|---|---|---|---|---|---|
| nssv1556247 | Remapped | Perfect | NC_000003.12:g.(16 5782372_165787389) _(165877359_165888 389)del | GRCh38.p12 | First Pass | NC_000003.12 | Chr3 | 165,782,372 | 165,787,389 | 165,877,359 | 165,888,389 |
| nssv1557351 | Remapped | Perfect | NC_000003.12:g.(16 5782372_165787389) _(165877359_165888 389)del | GRCh38.p12 | First Pass | NC_000003.12 | Chr3 | 165,782,372 | 165,787,389 | 165,877,359 | 165,888,389 |
| nssv1572201 | Remapped | Perfect | NC_000003.12:g.(16 5782372_165787389) _(165877359_165888 389)del | GRCh38.p12 | First Pass | NC_000003.12 | Chr3 | 165,782,372 | 165,787,389 | 165,877,359 | 165,888,389 |
| nssv1575437 | Remapped | Perfect | NC_000003.12:g.(16 5782372_165787389) _(165877359_165888 389)del | GRCh38.p12 | First Pass | NC_000003.12 | Chr3 | 165,782,372 | 165,787,389 | 165,877,359 | 165,888,389 |
| nssv1577416 | Remapped | Perfect | NC_000003.12:g.(16 5782372_165787389) _(165877359_165888 389)del | GRCh38.p12 | First Pass | NC_000003.12 | Chr3 | 165,782,372 | 165,787,389 | 165,877,359 | 165,888,389 |
| nssv1578556 | Remapped | Perfect | NC_000003.12:g.(16 5782372_165787389) _(165877359_165888 389)del | GRCh38.p12 | First Pass | NC_000003.12 | Chr3 | 165,782,372 | 165,787,389 | 165,877,359 | 165,888,389 |
| nssv1596741 | Remapped | Perfect | NC_000003.12:g.(16 5782372_165787389) _(165877359_165888 389)del | GRCh38.p12 | First Pass | NC_000003.12 | Chr3 | 165,782,372 | 165,787,389 | 165,877,359 | 165,888,389 |
| nssv1599859 | Remapped | Perfect | NC_000003.12:g.(16 5782372_165787389) _(165877359_165888 389)del | GRCh38.p12 | First Pass | NC_000003.12 | Chr3 | 165,782,372 | 165,787,389 | 165,877,359 | 165,888,389 |
| nssv1556247 | Remapped | Perfect | NC_000003.11:g.(16 5500160_165505177) _(165595147_165606 177)del | GRCh37.p13 | First Pass | NC_000003.11 | Chr3 | 165,500,160 | 165,505,177 | 165,595,147 | 165,606,177 |
| nssv1557351 | Remapped | Perfect | NC_000003.11:g.(16 5500160_165505177) _(165595147_165606 177)del | GRCh37.p13 | First Pass | NC_000003.11 | Chr3 | 165,500,160 | 165,505,177 | 165,595,147 | 165,606,177 |
| nssv1572201 | Remapped | Perfect | NC_000003.11:g.(16 5500160_165505177) _(165595147_165606 177)del | GRCh37.p13 | First Pass | NC_000003.11 | Chr3 | 165,500,160 | 165,505,177 | 165,595,147 | 165,606,177 |
| nssv1575437 | Remapped | Perfect | NC_000003.11:g.(16 5500160_165505177) _(165595147_165606 177)del | GRCh37.p13 | First Pass | NC_000003.11 | Chr3 | 165,500,160 | 165,505,177 | 165,595,147 | 165,606,177 |
| nssv1577416 | Remapped | Perfect | NC_000003.11:g.(16 5500160_165505177) _(165595147_165606 177)del | GRCh37.p13 | First Pass | NC_000003.11 | Chr3 | 165,500,160 | 165,505,177 | 165,595,147 | 165,606,177 |
| nssv1578556 | Remapped | Perfect | NC_000003.11:g.(16 5500160_165505177) _(165595147_165606 177)del | GRCh37.p13 | First Pass | NC_000003.11 | Chr3 | 165,500,160 | 165,505,177 | 165,595,147 | 165,606,177 |
| nssv1596741 | Remapped | Perfect | NC_000003.11:g.(16 5500160_165505177) _(165595147_165606 177)del | GRCh37.p13 | First Pass | NC_000003.11 | Chr3 | 165,500,160 | 165,505,177 | 165,595,147 | 165,606,177 |
| nssv1599859 | Remapped | Perfect | NC_000003.11:g.(16 5500160_165505177) _(165595147_165606 177)del | GRCh37.p13 | First Pass | NC_000003.11 | Chr3 | 165,500,160 | 165,505,177 | 165,595,147 | 165,606,177 |
| nssv1556247 | Submitted genomic | NC_000003.10:g.(16 6982854_166987871) _(167077841_167088 871)del | NCBI36 (hg18) | NC_000003.10 | Chr3 | 166,982,854 | 166,987,871 | 167,077,841 | 167,088,871 | ||
| nssv1557351 | Submitted genomic | NC_000003.10:g.(16 6982854_166987871) _(167077841_167088 871)del | NCBI36 (hg18) | NC_000003.10 | Chr3 | 166,982,854 | 166,987,871 | 167,077,841 | 167,088,871 | ||
| nssv1572201 | Submitted genomic | NC_000003.10:g.(16 6982854_166987871) _(167077841_167088 871)del | NCBI36 (hg18) | NC_000003.10 | Chr3 | 166,982,854 | 166,987,871 | 167,077,841 | 167,088,871 | ||
| nssv1575437 | Submitted genomic | NC_000003.10:g.(16 6982854_166987871) _(167077841_167088 871)del | NCBI36 (hg18) | NC_000003.10 | Chr3 | 166,982,854 | 166,987,871 | 167,077,841 | 167,088,871 | ||
| nssv1577416 | Submitted genomic | NC_000003.10:g.(16 6982854_166987871) _(167077841_167088 871)del | NCBI36 (hg18) | NC_000003.10 | Chr3 | 166,982,854 | 166,987,871 | 167,077,841 | 167,088,871 | ||
| nssv1578556 | Submitted genomic | NC_000003.10:g.(16 6982854_166987871) _(167077841_167088 871)del | NCBI36 (hg18) | NC_000003.10 | Chr3 | 166,982,854 | 166,987,871 | 167,077,841 | 167,088,871 | ||
| nssv1596741 | Submitted genomic | NC_000003.10:g.(16 6982854_166987871) _(167077841_167088 871)del | NCBI36 (hg18) | NC_000003.10 | Chr3 | 166,982,854 | 166,987,871 | 167,077,841 | 167,088,871 | ||
| nssv1599859 | Submitted genomic | NC_000003.10:g.(16 6982854_166987871) _(167077841_167088 871)del | NCBI36 (hg18) | NC_000003.10 | Chr3 | 166,982,854 | 166,987,871 | 167,077,841 | 167,088,871 |