nsv877963
- Organism: Homo sapiens
- Study:nstd71 (Xu et al. 2011)
- Variant Type:copy number variation
- Method Type:SNP array
- Submitted on:NCBI36 (hg18)
- Variant Calls:1
- Validation:Not tested
- Clinical Assertions: No
- Region Size:90,357
- Publication(s):Xu et al. 2011
Source: NCBI
- Genome View
- Variant Region Details and Evidence
- Validation Information
- Clinical Assertions
- Genotype Information
Genome View
Select assembly:Overlapping variant regions from other studies: 404 SVs from 54 studies. See in: genome view
Overlapping variant regions from other studies: 404 SVs from 54 studies. See in: genome view
Overlapping variant regions from other studies: 120 SVs from 16 studies. See in: genome view
Variant Region Placement Information
| Variant Region ID | Placement Type | Score | Assembly | Assembly Unit | Reciprocity | Sequence ID | Chr | Outer Start | Inner Start | Inner Stop | Outer Stop |
|---|---|---|---|---|---|---|---|---|---|---|---|
| nsv877963 | Remapped | Perfect | GRCh38.p12 | Primary Assembly | First Pass | NC_000003.12 | Chr3 | 166,714,703 | 166,726,098 | 166,799,462 | 166,805,059 |
| nsv877963 | Remapped | Perfect | GRCh37.p13 | Primary Assembly | First Pass | NC_000003.11 | Chr3 | 166,432,491 | 166,443,886 | 166,517,250 | 166,522,847 |
| nsv877963 | Submitted genomic | NCBI36 (hg18) | Primary Assembly | NC_000003.10 | Chr3 | 167,915,185 | 167,926,580 | 167,999,944 | 168,005,541 |
Variant Call Information
| Variant Call ID | Type | Sample ID | Method | Analysis | Other Calls in this Sample and Study |
|---|---|---|---|---|---|
| nssv1566028 | copy number loss | IS30562 | SNP array | SNP genotyping analysis | 16 |
Variant Call Placement Information
| Variant Call ID | Placement Type | Score | HGVS | Assembly | Reciprocity | Sequence ID | Chr | Outer Start | Inner Start | Inner Stop | Outer Stop |
|---|---|---|---|---|---|---|---|---|---|---|---|
| nssv1566028 | Remapped | Perfect | NC_000003.12:g.(16 6714703_166726098) _(166799462_166805 059)del | GRCh38.p12 | First Pass | NC_000003.12 | Chr3 | 166,714,703 | 166,726,098 | 166,799,462 | 166,805,059 |
| nssv1566028 | Remapped | Perfect | NC_000003.11:g.(16 6432491_166443886) _(166517250_166522 847)del | GRCh37.p13 | First Pass | NC_000003.11 | Chr3 | 166,432,491 | 166,443,886 | 166,517,250 | 166,522,847 |
| nssv1566028 | Submitted genomic | NC_000003.10:g.(16 7915185_167926580) _(167999944_168005 541)del | NCBI36 (hg18) | NC_000003.10 | Chr3 | 167,915,185 | 167,926,580 | 167,999,944 | 168,005,541 |