nsv878210
- Organism: Homo sapiens
- Study:nstd71 (Xu et al. 2011)
- Variant Type:copy number variation
- Method Type:SNP array
- Submitted on:NCBI36 (hg18)
- Variant Calls:1
- Validation:Not tested
- Clinical Assertions: No
- Region Size:78,045
- Publication(s):Xu et al. 2011
Source: NCBI
- Genome View
- Variant Region Details and Evidence
- Validation Information
- Clinical Assertions
- Genotype Information
Genome View
Select assembly:Overlapping variant regions from other studies: 604 SVs from 63 studies. See in: genome view
Overlapping variant regions from other studies: 604 SVs from 63 studies. See in: genome view
Overlapping variant regions from other studies: 172 SVs from 18 studies. See in: genome view
Variant Region Placement Information
| Variant Region ID | Placement Type | Score | Assembly | Assembly Unit | Reciprocity | Sequence ID | Chr | Outer Start | Inner Start | Inner Stop | Outer Stop |
|---|---|---|---|---|---|---|---|---|---|---|---|
| nsv878210 | Remapped | Perfect | GRCh38.p12 | Primary Assembly | First Pass | NC_000003.12 | Chr3 | 197,799,330 | 197,824,540 | 197,870,323 | 197,877,374 |
| nsv878210 | Remapped | Perfect | GRCh37.p13 | Primary Assembly | First Pass | NC_000003.11 | Chr3 | 197,526,201 | 197,551,411 | 197,597,194 | 197,604,245 |
| nsv878210 | Submitted genomic | NCBI36 (hg18) | Primary Assembly | NC_000003.10 | Chr3 | 199,010,598 | 199,035,808 | 199,081,591 | 199,088,642 |
Variant Call Information
| Variant Call ID | Type | Sample ID | Method | Analysis | Other Calls in this Sample and Study |
|---|---|---|---|---|---|
| nssv1531539 | copy number gain | MS10535 | SNP array | SNP genotyping analysis | 9 |
Variant Call Placement Information
| Variant Call ID | Placement Type | Score | HGVS | Assembly | Reciprocity | Sequence ID | Chr | Outer Start | Inner Start | Inner Stop | Outer Stop |
|---|---|---|---|---|---|---|---|---|---|---|---|
| nssv1531539 | Remapped | Perfect | NC_000003.12:g.(19 7799330_197824540) _(197870323_197877 374)dup | GRCh38.p12 | First Pass | NC_000003.12 | Chr3 | 197,799,330 | 197,824,540 | 197,870,323 | 197,877,374 |
| nssv1531539 | Remapped | Perfect | NC_000003.11:g.(19 7526201_197551411) _(197597194_197604 245)dup | GRCh37.p13 | First Pass | NC_000003.11 | Chr3 | 197,526,201 | 197,551,411 | 197,597,194 | 197,604,245 |
| nssv1531539 | Submitted genomic | NC_000003.10:g.(19 9010598_199035808) _(199081591_199088 642)dup | NCBI36 (hg18) | NC_000003.10 | Chr3 | 199,010,598 | 199,035,808 | 199,081,591 | 199,088,642 |