nsv878729
- Organism: Homo sapiens
- Study:nstd71 (Xu et al. 2011)
- Variant Type:copy number variation
- Method Type:SNP array
- Submitted on:NCBI36 (hg18)
- Variant Calls:6
- Validation:Not tested
- Clinical Assertions: No
- Region Size:41,330
- Publication(s):Xu et al. 2011
Source: NCBI
- Genome View
- Variant Region Details and Evidence
- Validation Information
- Clinical Assertions
- Genotype Information
Genome View
Select assembly:Overlapping variant regions from other studies: 320 SVs from 59 studies. See in: genome view
Overlapping variant regions from other studies: 320 SVs from 59 studies. See in: genome view
Overlapping variant regions from other studies: 83 SVs from 18 studies. See in: genome view
Variant Region Placement Information
| Variant Region ID | Placement Type | Score | Assembly | Assembly Unit | Reciprocity | Sequence ID | Chr | Outer Start | Inner Start | Inner Stop | Outer Stop |
|---|---|---|---|---|---|---|---|---|---|---|---|
| nsv878729 | Remapped | Perfect | GRCh38.p12 | Primary Assembly | First Pass | NC_000004.12 | Chr4 | 19,086,763 | 19,090,534 | 19,120,819 | 19,128,092 |
| nsv878729 | Remapped | Perfect | GRCh37.p13 | Primary Assembly | First Pass | NC_000004.11 | Chr4 | 19,088,386 | 19,092,157 | 19,122,442 | 19,129,715 |
| nsv878729 | Submitted genomic | NCBI36 (hg18) | Primary Assembly | NC_000004.10 | Chr4 | 18,697,484 | 18,701,255 | 18,731,540 | 18,738,813 |
Variant Call Information
| Variant Call ID | Type | Sample ID | Method | Analysis | Other Calls in this Sample and Study |
|---|---|---|---|---|---|
| nssv1515937 | copy number loss | SP56319 | SNP array | SNP genotyping analysis | 9 |
| nssv1524113 | copy number loss | SP54853 | SNP array | SNP genotyping analysis | 13 |
| nssv1525074 | copy number loss | SP55493 | SNP array | SNP genotyping analysis | 5 |
| nssv1525264 | copy number loss | SP56387 | SNP array | SNP genotyping analysis | 11 |
| nssv1562138 | copy number loss | MS25396 | SNP array | SNP genotyping analysis | 12 |
| nssv1584721 | copy number loss | IS37157 | SNP array | SNP genotyping analysis | 15 |
Variant Call Placement Information
| Variant Call ID | Placement Type | Score | HGVS | Assembly | Reciprocity | Sequence ID | Chr | Outer Start | Inner Start | Inner Stop | Outer Stop |
|---|---|---|---|---|---|---|---|---|---|---|---|
| nssv1515937 | Remapped | Perfect | NC_000004.12:g.(19 086763_19090534)_( 19120819_19128092) del | GRCh38.p12 | First Pass | NC_000004.12 | Chr4 | 19,086,763 | 19,090,534 | 19,120,819 | 19,128,092 |
| nssv1524113 | Remapped | Perfect | NC_000004.12:g.(19 086763_19090534)_( 19120819_19128092) del | GRCh38.p12 | First Pass | NC_000004.12 | Chr4 | 19,086,763 | 19,090,534 | 19,120,819 | 19,128,092 |
| nssv1525074 | Remapped | Perfect | NC_000004.12:g.(19 086763_19090534)_( 19120819_19128092) del | GRCh38.p12 | First Pass | NC_000004.12 | Chr4 | 19,086,763 | 19,090,534 | 19,120,819 | 19,128,092 |
| nssv1525264 | Remapped | Perfect | NC_000004.12:g.(19 086763_19090534)_( 19120819_19128092) del | GRCh38.p12 | First Pass | NC_000004.12 | Chr4 | 19,086,763 | 19,090,534 | 19,120,819 | 19,128,092 |
| nssv1562138 | Remapped | Perfect | NC_000004.12:g.(19 086763_19090534)_( 19120819_19128092) del | GRCh38.p12 | First Pass | NC_000004.12 | Chr4 | 19,086,763 | 19,090,534 | 19,120,819 | 19,128,092 |
| nssv1584721 | Remapped | Perfect | NC_000004.12:g.(19 086763_19090534)_( 19120819_19128092) del | GRCh38.p12 | First Pass | NC_000004.12 | Chr4 | 19,086,763 | 19,090,534 | 19,120,819 | 19,128,092 |
| nssv1515937 | Remapped | Perfect | NC_000004.11:g.(19 088386_19092157)_( 19122442_19129715) del | GRCh37.p13 | First Pass | NC_000004.11 | Chr4 | 19,088,386 | 19,092,157 | 19,122,442 | 19,129,715 |
| nssv1524113 | Remapped | Perfect | NC_000004.11:g.(19 088386_19092157)_( 19122442_19129715) del | GRCh37.p13 | First Pass | NC_000004.11 | Chr4 | 19,088,386 | 19,092,157 | 19,122,442 | 19,129,715 |
| nssv1525074 | Remapped | Perfect | NC_000004.11:g.(19 088386_19092157)_( 19122442_19129715) del | GRCh37.p13 | First Pass | NC_000004.11 | Chr4 | 19,088,386 | 19,092,157 | 19,122,442 | 19,129,715 |
| nssv1525264 | Remapped | Perfect | NC_000004.11:g.(19 088386_19092157)_( 19122442_19129715) del | GRCh37.p13 | First Pass | NC_000004.11 | Chr4 | 19,088,386 | 19,092,157 | 19,122,442 | 19,129,715 |
| nssv1562138 | Remapped | Perfect | NC_000004.11:g.(19 088386_19092157)_( 19122442_19129715) del | GRCh37.p13 | First Pass | NC_000004.11 | Chr4 | 19,088,386 | 19,092,157 | 19,122,442 | 19,129,715 |
| nssv1584721 | Remapped | Perfect | NC_000004.11:g.(19 088386_19092157)_( 19122442_19129715) del | GRCh37.p13 | First Pass | NC_000004.11 | Chr4 | 19,088,386 | 19,092,157 | 19,122,442 | 19,129,715 |
| nssv1515937 | Submitted genomic | NC_000004.10:g.(18 697484_18701255)_( 18731540_18738813) del | NCBI36 (hg18) | NC_000004.10 | Chr4 | 18,697,484 | 18,701,255 | 18,731,540 | 18,738,813 | ||
| nssv1524113 | Submitted genomic | NC_000004.10:g.(18 697484_18701255)_( 18731540_18738813) del | NCBI36 (hg18) | NC_000004.10 | Chr4 | 18,697,484 | 18,701,255 | 18,731,540 | 18,738,813 | ||
| nssv1525074 | Submitted genomic | NC_000004.10:g.(18 697484_18701255)_( 18731540_18738813) del | NCBI36 (hg18) | NC_000004.10 | Chr4 | 18,697,484 | 18,701,255 | 18,731,540 | 18,738,813 | ||
| nssv1525264 | Submitted genomic | NC_000004.10:g.(18 697484_18701255)_( 18731540_18738813) del | NCBI36 (hg18) | NC_000004.10 | Chr4 | 18,697,484 | 18,701,255 | 18,731,540 | 18,738,813 | ||
| nssv1562138 | Submitted genomic | NC_000004.10:g.(18 697484_18701255)_( 18731540_18738813) del | NCBI36 (hg18) | NC_000004.10 | Chr4 | 18,697,484 | 18,701,255 | 18,731,540 | 18,738,813 | ||
| nssv1584721 | Submitted genomic | NC_000004.10:g.(18 697484_18701255)_( 18731540_18738813) del | NCBI36 (hg18) | NC_000004.10 | Chr4 | 18,697,484 | 18,701,255 | 18,731,540 | 18,738,813 |