nsv878763
- Organism: Homo sapiens
- Study:nstd71 (Xu et al. 2011)
- Variant Type:copy number variation
- Method Type:SNP array
- Submitted on:NCBI36 (hg18)
- Variant Calls:13
- Validation:Not tested
- Clinical Assertions: No
- Region Size:28,721
- Publication(s):Xu et al. 2011
Source: NCBI
- Genome View
- Variant Region Details and Evidence
- Validation Information
- Clinical Assertions
- Genotype Information
Genome View
Select assembly:Overlapping variant regions from other studies: 456 SVs from 63 studies. See in: genome view
Overlapping variant regions from other studies: 456 SVs from 63 studies. See in: genome view
Overlapping variant regions from other studies: 139 SVs from 21 studies. See in: genome view
Variant Region Placement Information
| Variant Region ID | Placement Type | Score | Assembly | Assembly Unit | Reciprocity | Sequence ID | Chr | Outer Start | Inner Start | Inner Stop | Outer Stop |
|---|---|---|---|---|---|---|---|---|---|---|---|
| nsv878763 | Remapped | Perfect | GRCh38.p12 | Primary Assembly | First Pass | NC_000004.12 | Chr4 | 25,552,889 | 25,555,425 | 25,576,891 | 25,581,609 |
| nsv878763 | Remapped | Perfect | GRCh37.p13 | Primary Assembly | First Pass | NC_000004.11 | Chr4 | 25,554,511 | 25,557,047 | 25,578,513 | 25,583,231 |
| nsv878763 | Submitted genomic | NCBI36 (hg18) | Primary Assembly | NC_000004.10 | Chr4 | 25,163,609 | 25,166,145 | 25,187,611 | 25,192,329 |
Variant Call Information
| Variant Call ID | Type | Sample ID | Method | Analysis | Other Calls in this Sample and Study |
|---|---|---|---|---|---|
| nssv1533854 | copy number gain | MS11307 | SNP array | SNP genotyping analysis | 22 |
| nssv1544663 | copy number gain | MS16416 | SNP array | SNP genotyping analysis | 11 |
| nssv1566383 | copy number gain | IS30669 | SNP array | SNP genotyping analysis | 15 |
| nssv1574154 | copy number gain | IS33514 | SNP array | SNP genotyping analysis | 56 |
| nssv1582172 | copy number gain | IS35803 | SNP array | SNP genotyping analysis | 13 |
| nssv1589509 | copy number gain | IS38378 | SNP array | SNP genotyping analysis | 18 |
| nssv1589915 | copy number gain | IS38430 | SNP array | SNP genotyping analysis | 34 |
| nssv1593075 | copy number gain | IS39353 | SNP array | SNP genotyping analysis | 6 |
| nssv1593198 | copy number gain | IS39369 | SNP array | SNP genotyping analysis | 12 |
| nssv1596998 | copy number gain | IS40702 | SNP array | SNP genotyping analysis | 8 |
| nssv1597632 | copy number gain | IS41305 | SNP array | SNP genotyping analysis | 11 |
| nssv1599656 | copy number gain | IS41754 | SNP array | SNP genotyping analysis | 6 |
| nssv1601008 | copy number gain | IS41956 | SNP array | SNP genotyping analysis | 21 |
Variant Call Placement Information
| Variant Call ID | Placement Type | Score | HGVS | Assembly | Reciprocity | Sequence ID | Chr | Outer Start | Inner Start | Inner Stop | Outer Stop |
|---|---|---|---|---|---|---|---|---|---|---|---|
| nssv1533854 | Remapped | Perfect | NC_000004.12:g.(25 552889_25555425)_( 25576891_25581609) dup | GRCh38.p12 | First Pass | NC_000004.12 | Chr4 | 25,552,889 | 25,555,425 | 25,576,891 | 25,581,609 |
| nssv1544663 | Remapped | Perfect | NC_000004.12:g.(25 552889_25555425)_( 25576891_25581609) dup | GRCh38.p12 | First Pass | NC_000004.12 | Chr4 | 25,552,889 | 25,555,425 | 25,576,891 | 25,581,609 |
| nssv1566383 | Remapped | Perfect | NC_000004.12:g.(25 552889_25555425)_( 25576891_25581609) dup | GRCh38.p12 | First Pass | NC_000004.12 | Chr4 | 25,552,889 | 25,555,425 | 25,576,891 | 25,581,609 |
| nssv1574154 | Remapped | Perfect | NC_000004.12:g.(25 552889_25555425)_( 25576891_25581609) dup | GRCh38.p12 | First Pass | NC_000004.12 | Chr4 | 25,552,889 | 25,555,425 | 25,576,891 | 25,581,609 |
| nssv1582172 | Remapped | Perfect | NC_000004.12:g.(25 552889_25555425)_( 25576891_25581609) dup | GRCh38.p12 | First Pass | NC_000004.12 | Chr4 | 25,552,889 | 25,555,425 | 25,576,891 | 25,581,609 |
| nssv1589509 | Remapped | Perfect | NC_000004.12:g.(25 552889_25555425)_( 25576891_25581609) dup | GRCh38.p12 | First Pass | NC_000004.12 | Chr4 | 25,552,889 | 25,555,425 | 25,576,891 | 25,581,609 |
| nssv1589915 | Remapped | Perfect | NC_000004.12:g.(25 552889_25555425)_( 25576891_25581609) dup | GRCh38.p12 | First Pass | NC_000004.12 | Chr4 | 25,552,889 | 25,555,425 | 25,576,891 | 25,581,609 |
| nssv1593075 | Remapped | Perfect | NC_000004.12:g.(25 552889_25555425)_( 25576891_25581609) dup | GRCh38.p12 | First Pass | NC_000004.12 | Chr4 | 25,552,889 | 25,555,425 | 25,576,891 | 25,581,609 |
| nssv1593198 | Remapped | Perfect | NC_000004.12:g.(25 552889_25555425)_( 25576891_25581609) dup | GRCh38.p12 | First Pass | NC_000004.12 | Chr4 | 25,552,889 | 25,555,425 | 25,576,891 | 25,581,609 |
| nssv1596998 | Remapped | Perfect | NC_000004.12:g.(25 552889_25555425)_( 25576891_25581609) dup | GRCh38.p12 | First Pass | NC_000004.12 | Chr4 | 25,552,889 | 25,555,425 | 25,576,891 | 25,581,609 |
| nssv1597632 | Remapped | Perfect | NC_000004.12:g.(25 552889_25555425)_( 25576891_25581609) dup | GRCh38.p12 | First Pass | NC_000004.12 | Chr4 | 25,552,889 | 25,555,425 | 25,576,891 | 25,581,609 |
| nssv1599656 | Remapped | Perfect | NC_000004.12:g.(25 552889_25555425)_( 25576891_25581609) dup | GRCh38.p12 | First Pass | NC_000004.12 | Chr4 | 25,552,889 | 25,555,425 | 25,576,891 | 25,581,609 |
| nssv1601008 | Remapped | Perfect | NC_000004.12:g.(25 552889_25555425)_( 25576891_25581609) dup | GRCh38.p12 | First Pass | NC_000004.12 | Chr4 | 25,552,889 | 25,555,425 | 25,576,891 | 25,581,609 |
| nssv1533854 | Remapped | Perfect | NC_000004.11:g.(25 554511_25557047)_( 25578513_25583231) dup | GRCh37.p13 | First Pass | NC_000004.11 | Chr4 | 25,554,511 | 25,557,047 | 25,578,513 | 25,583,231 |
| nssv1544663 | Remapped | Perfect | NC_000004.11:g.(25 554511_25557047)_( 25578513_25583231) dup | GRCh37.p13 | First Pass | NC_000004.11 | Chr4 | 25,554,511 | 25,557,047 | 25,578,513 | 25,583,231 |
| nssv1566383 | Remapped | Perfect | NC_000004.11:g.(25 554511_25557047)_( 25578513_25583231) dup | GRCh37.p13 | First Pass | NC_000004.11 | Chr4 | 25,554,511 | 25,557,047 | 25,578,513 | 25,583,231 |
| nssv1574154 | Remapped | Perfect | NC_000004.11:g.(25 554511_25557047)_( 25578513_25583231) dup | GRCh37.p13 | First Pass | NC_000004.11 | Chr4 | 25,554,511 | 25,557,047 | 25,578,513 | 25,583,231 |
| nssv1582172 | Remapped | Perfect | NC_000004.11:g.(25 554511_25557047)_( 25578513_25583231) dup | GRCh37.p13 | First Pass | NC_000004.11 | Chr4 | 25,554,511 | 25,557,047 | 25,578,513 | 25,583,231 |
| nssv1589509 | Remapped | Perfect | NC_000004.11:g.(25 554511_25557047)_( 25578513_25583231) dup | GRCh37.p13 | First Pass | NC_000004.11 | Chr4 | 25,554,511 | 25,557,047 | 25,578,513 | 25,583,231 |
| nssv1589915 | Remapped | Perfect | NC_000004.11:g.(25 554511_25557047)_( 25578513_25583231) dup | GRCh37.p13 | First Pass | NC_000004.11 | Chr4 | 25,554,511 | 25,557,047 | 25,578,513 | 25,583,231 |
| nssv1593075 | Remapped | Perfect | NC_000004.11:g.(25 554511_25557047)_( 25578513_25583231) dup | GRCh37.p13 | First Pass | NC_000004.11 | Chr4 | 25,554,511 | 25,557,047 | 25,578,513 | 25,583,231 |
| nssv1593198 | Remapped | Perfect | NC_000004.11:g.(25 554511_25557047)_( 25578513_25583231) dup | GRCh37.p13 | First Pass | NC_000004.11 | Chr4 | 25,554,511 | 25,557,047 | 25,578,513 | 25,583,231 |
| nssv1596998 | Remapped | Perfect | NC_000004.11:g.(25 554511_25557047)_( 25578513_25583231) dup | GRCh37.p13 | First Pass | NC_000004.11 | Chr4 | 25,554,511 | 25,557,047 | 25,578,513 | 25,583,231 |
| nssv1597632 | Remapped | Perfect | NC_000004.11:g.(25 554511_25557047)_( 25578513_25583231) dup | GRCh37.p13 | First Pass | NC_000004.11 | Chr4 | 25,554,511 | 25,557,047 | 25,578,513 | 25,583,231 |
| nssv1599656 | Remapped | Perfect | NC_000004.11:g.(25 554511_25557047)_( 25578513_25583231) dup | GRCh37.p13 | First Pass | NC_000004.11 | Chr4 | 25,554,511 | 25,557,047 | 25,578,513 | 25,583,231 |
| nssv1601008 | Remapped | Perfect | NC_000004.11:g.(25 554511_25557047)_( 25578513_25583231) dup | GRCh37.p13 | First Pass | NC_000004.11 | Chr4 | 25,554,511 | 25,557,047 | 25,578,513 | 25,583,231 |
| nssv1533854 | Submitted genomic | NC_000004.10:g.(25 163609_25166145)_( 25187611_25192329) dup | NCBI36 (hg18) | NC_000004.10 | Chr4 | 25,163,609 | 25,166,145 | 25,187,611 | 25,192,329 | ||
| nssv1544663 | Submitted genomic | NC_000004.10:g.(25 163609_25166145)_( 25187611_25192329) dup | NCBI36 (hg18) | NC_000004.10 | Chr4 | 25,163,609 | 25,166,145 | 25,187,611 | 25,192,329 | ||
| nssv1566383 | Submitted genomic | NC_000004.10:g.(25 163609_25166145)_( 25187611_25192329) dup | NCBI36 (hg18) | NC_000004.10 | Chr4 | 25,163,609 | 25,166,145 | 25,187,611 | 25,192,329 | ||
| nssv1574154 | Submitted genomic | NC_000004.10:g.(25 163609_25166145)_( 25187611_25192329) dup | NCBI36 (hg18) | NC_000004.10 | Chr4 | 25,163,609 | 25,166,145 | 25,187,611 | 25,192,329 | ||
| nssv1582172 | Submitted genomic | NC_000004.10:g.(25 163609_25166145)_( 25187611_25192329) dup | NCBI36 (hg18) | NC_000004.10 | Chr4 | 25,163,609 | 25,166,145 | 25,187,611 | 25,192,329 | ||
| nssv1589509 | Submitted genomic | NC_000004.10:g.(25 163609_25166145)_( 25187611_25192329) dup | NCBI36 (hg18) | NC_000004.10 | Chr4 | 25,163,609 | 25,166,145 | 25,187,611 | 25,192,329 | ||
| nssv1589915 | Submitted genomic | NC_000004.10:g.(25 163609_25166145)_( 25187611_25192329) dup | NCBI36 (hg18) | NC_000004.10 | Chr4 | 25,163,609 | 25,166,145 | 25,187,611 | 25,192,329 | ||
| nssv1593075 | Submitted genomic | NC_000004.10:g.(25 163609_25166145)_( 25187611_25192329) dup | NCBI36 (hg18) | NC_000004.10 | Chr4 | 25,163,609 | 25,166,145 | 25,187,611 | 25,192,329 | ||
| nssv1593198 | Submitted genomic | NC_000004.10:g.(25 163609_25166145)_( 25187611_25192329) dup | NCBI36 (hg18) | NC_000004.10 | Chr4 | 25,163,609 | 25,166,145 | 25,187,611 | 25,192,329 | ||
| nssv1596998 | Submitted genomic | NC_000004.10:g.(25 163609_25166145)_( 25187611_25192329) dup | NCBI36 (hg18) | NC_000004.10 | Chr4 | 25,163,609 | 25,166,145 | 25,187,611 | 25,192,329 | ||
| nssv1597632 | Submitted genomic | NC_000004.10:g.(25 163609_25166145)_( 25187611_25192329) dup | NCBI36 (hg18) | NC_000004.10 | Chr4 | 25,163,609 | 25,166,145 | 25,187,611 | 25,192,329 | ||
| nssv1599656 | Submitted genomic | NC_000004.10:g.(25 163609_25166145)_( 25187611_25192329) dup | NCBI36 (hg18) | NC_000004.10 | Chr4 | 25,163,609 | 25,166,145 | 25,187,611 | 25,192,329 | ||
| nssv1601008 | Submitted genomic | NC_000004.10:g.(25 163609_25166145)_( 25187611_25192329) dup | NCBI36 (hg18) | NC_000004.10 | Chr4 | 25,163,609 | 25,166,145 | 25,187,611 | 25,192,329 |