nsv878789
- Organism: Homo sapiens
- Study:nstd71 (Xu et al. 2011)
- Variant Type:copy number variation
- Method Type:SNP array
- Submitted on:NCBI36 (hg18)
- Variant Calls:1
- Validation:Not tested
- Clinical Assertions: No
- Region Size:544,935
- Publication(s):Xu et al. 2011
Source: NCBI
- Genome View
- Variant Region Details and Evidence
- Validation Information
- Clinical Assertions
- Genotype Information
Genome View
Select assembly:Overlapping variant regions from other studies: 1679 SVs from 83 studies. See in: genome view
Overlapping variant regions from other studies: 1679 SVs from 83 studies. See in: genome view
Overlapping variant regions from other studies: 424 SVs from 25 studies. See in: genome view
Variant Region Placement Information
| Variant Region ID | Placement Type | Score | Assembly | Assembly Unit | Reciprocity | Sequence ID | Chr | Outer Start | Inner Start | Inner Stop | Outer Stop |
|---|---|---|---|---|---|---|---|---|---|---|---|
| nsv878789 | Remapped | Perfect | GRCh38.p12 | Primary Assembly | First Pass | NC_000004.12 | Chr4 | 29,005,253 | 29,014,971 | 29,545,035 | 29,550,187 |
| nsv878789 | Remapped | Perfect | GRCh37.p13 | Primary Assembly | First Pass | NC_000004.11 | Chr4 | 29,006,875 | 29,016,593 | 29,546,657 | 29,551,809 |
| nsv878789 | Submitted genomic | NCBI36 (hg18) | Primary Assembly | NC_000004.10 | Chr4 | 28,615,973 | 28,625,691 | 29,155,755 | 29,160,907 |
Variant Call Information
| Variant Call ID | Type | Sample ID | Method | Analysis | Other Calls in this Sample and Study |
|---|---|---|---|---|---|
| nssv1551085 | copy number gain | MS18756 | SNP array | SNP genotyping analysis | 18 |
Variant Call Placement Information
| Variant Call ID | Placement Type | Score | HGVS | Assembly | Reciprocity | Sequence ID | Chr | Outer Start | Inner Start | Inner Stop | Outer Stop |
|---|---|---|---|---|---|---|---|---|---|---|---|
| nssv1551085 | Remapped | Perfect | NC_000004.12:g.(29 005253_29014971)_( 29545035_29550187) dup | GRCh38.p12 | First Pass | NC_000004.12 | Chr4 | 29,005,253 | 29,014,971 | 29,545,035 | 29,550,187 |
| nssv1551085 | Remapped | Perfect | NC_000004.11:g.(29 006875_29016593)_( 29546657_29551809) dup | GRCh37.p13 | First Pass | NC_000004.11 | Chr4 | 29,006,875 | 29,016,593 | 29,546,657 | 29,551,809 |
| nssv1551085 | Submitted genomic | NC_000004.10:g.(28 615973_28625691)_( 29155755_29160907) dup | NCBI36 (hg18) | NC_000004.10 | Chr4 | 28,615,973 | 28,625,691 | 29,155,755 | 29,160,907 |