nsv878846
- Organism: Homo sapiens
- Study:nstd71 (Xu et al. 2011)
- Variant Type:copy number variation
- Method Type:SNP array
- Submitted on:NCBI36 (hg18)
- Variant Calls:7
- Validation:Not tested
- Clinical Assertions: No
- Region Size:117,760
- Publication(s):Xu et al. 2011
Source: NCBI
- Genome View
- Variant Region Details and Evidence
- Validation Information
- Clinical Assertions
- Genotype Information
Genome View
Select assembly:Overlapping variant regions from other studies: 543 SVs from 77 studies. See in: genome view
Overlapping variant regions from other studies: 543 SVs from 77 studies. See in: genome view
Overlapping variant regions from other studies: 174 SVs from 21 studies. See in: genome view
Variant Region Placement Information
| Variant Region ID | Placement Type | Score | Assembly | Assembly Unit | Reciprocity | Sequence ID | Chr | Outer Start | Inner Start | Inner Stop | Outer Stop |
|---|---|---|---|---|---|---|---|---|---|---|---|
| nsv878846 | Remapped | Perfect | GRCh38.p12 | Primary Assembly | First Pass | NC_000004.12 | Chr4 | 32,451,351 | 32,459,955 | 32,566,996 | 32,569,110 |
| nsv878846 | Remapped | Perfect | GRCh37.p13 | Primary Assembly | First Pass | NC_000004.11 | Chr4 | 32,452,973 | 32,461,577 | 32,568,618 | 32,570,732 |
| nsv878846 | Submitted genomic | NCBI36 (hg18) | Primary Assembly | NC_000004.10 | Chr4 | 32,096,871 | 32,105,475 | 32,212,516 | 32,214,630 |
Variant Call Information
| Variant Call ID | Type | Sample ID | Method | Analysis | Other Calls in this Sample and Study |
|---|---|---|---|---|---|
| nssv1552250 | copy number loss | MS19303 | SNP array | SNP genotyping analysis | 33 |
| nssv1552761 | copy number loss | MS19630 | SNP array | SNP genotyping analysis | 61 |
| nssv1557070 | copy number loss | MS22353 | SNP array | SNP genotyping analysis | 36 |
| nssv1558251 | copy number loss | MS23184 | SNP array | SNP genotyping analysis | 15 |
| nssv1578323 | copy number loss | IS34758 | SNP array | SNP genotyping analysis | 13 |
| nssv1580675 | copy number gain | IS35422 | SNP array | SNP genotyping analysis | 12 |
| nssv1596742 | copy number loss | IS40627 | SNP array | SNP genotyping analysis | 34 |
Variant Call Placement Information
| Variant Call ID | Placement Type | Score | HGVS | Assembly | Reciprocity | Sequence ID | Chr | Outer Start | Inner Start | Inner Stop | Outer Stop |
|---|---|---|---|---|---|---|---|---|---|---|---|
| nssv1552250 | Remapped | Perfect | NC_000004.12:g.(32 451351_32459955)_( 32566996_32569110) del | GRCh38.p12 | First Pass | NC_000004.12 | Chr4 | 32,451,351 | 32,459,955 | 32,566,996 | 32,569,110 |
| nssv1552761 | Remapped | Perfect | NC_000004.12:g.(32 451351_32459955)_( 32566996_32569110) del | GRCh38.p12 | First Pass | NC_000004.12 | Chr4 | 32,451,351 | 32,459,955 | 32,566,996 | 32,569,110 |
| nssv1557070 | Remapped | Perfect | NC_000004.12:g.(32 451351_32459955)_( 32566996_32569110) del | GRCh38.p12 | First Pass | NC_000004.12 | Chr4 | 32,451,351 | 32,459,955 | 32,566,996 | 32,569,110 |
| nssv1558251 | Remapped | Perfect | NC_000004.12:g.(32 451351_32459955)_( 32566996_32569110) del | GRCh38.p12 | First Pass | NC_000004.12 | Chr4 | 32,451,351 | 32,459,955 | 32,566,996 | 32,569,110 |
| nssv1578323 | Remapped | Perfect | NC_000004.12:g.(32 451351_32459955)_( 32566996_32569110) del | GRCh38.p12 | First Pass | NC_000004.12 | Chr4 | 32,451,351 | 32,459,955 | 32,566,996 | 32,569,110 |
| nssv1580675 | Remapped | Perfect | NC_000004.12:g.(32 451351_32459955)_( 32566996_32569110) dup | GRCh38.p12 | First Pass | NC_000004.12 | Chr4 | 32,451,351 | 32,459,955 | 32,566,996 | 32,569,110 |
| nssv1596742 | Remapped | Perfect | NC_000004.12:g.(32 451351_32459955)_( 32566996_32569110) del | GRCh38.p12 | First Pass | NC_000004.12 | Chr4 | 32,451,351 | 32,459,955 | 32,566,996 | 32,569,110 |
| nssv1552250 | Remapped | Perfect | NC_000004.11:g.(32 452973_32461577)_( 32568618_32570732) del | GRCh37.p13 | First Pass | NC_000004.11 | Chr4 | 32,452,973 | 32,461,577 | 32,568,618 | 32,570,732 |
| nssv1552761 | Remapped | Perfect | NC_000004.11:g.(32 452973_32461577)_( 32568618_32570732) del | GRCh37.p13 | First Pass | NC_000004.11 | Chr4 | 32,452,973 | 32,461,577 | 32,568,618 | 32,570,732 |
| nssv1557070 | Remapped | Perfect | NC_000004.11:g.(32 452973_32461577)_( 32568618_32570732) del | GRCh37.p13 | First Pass | NC_000004.11 | Chr4 | 32,452,973 | 32,461,577 | 32,568,618 | 32,570,732 |
| nssv1558251 | Remapped | Perfect | NC_000004.11:g.(32 452973_32461577)_( 32568618_32570732) del | GRCh37.p13 | First Pass | NC_000004.11 | Chr4 | 32,452,973 | 32,461,577 | 32,568,618 | 32,570,732 |
| nssv1578323 | Remapped | Perfect | NC_000004.11:g.(32 452973_32461577)_( 32568618_32570732) del | GRCh37.p13 | First Pass | NC_000004.11 | Chr4 | 32,452,973 | 32,461,577 | 32,568,618 | 32,570,732 |
| nssv1580675 | Remapped | Perfect | NC_000004.11:g.(32 452973_32461577)_( 32568618_32570732) dup | GRCh37.p13 | First Pass | NC_000004.11 | Chr4 | 32,452,973 | 32,461,577 | 32,568,618 | 32,570,732 |
| nssv1596742 | Remapped | Perfect | NC_000004.11:g.(32 452973_32461577)_( 32568618_32570732) del | GRCh37.p13 | First Pass | NC_000004.11 | Chr4 | 32,452,973 | 32,461,577 | 32,568,618 | 32,570,732 |
| nssv1552250 | Submitted genomic | NC_000004.10:g.(32 096871_32105475)_( 32212516_32214630) del | NCBI36 (hg18) | NC_000004.10 | Chr4 | 32,096,871 | 32,105,475 | 32,212,516 | 32,214,630 | ||
| nssv1552761 | Submitted genomic | NC_000004.10:g.(32 096871_32105475)_( 32212516_32214630) del | NCBI36 (hg18) | NC_000004.10 | Chr4 | 32,096,871 | 32,105,475 | 32,212,516 | 32,214,630 | ||
| nssv1557070 | Submitted genomic | NC_000004.10:g.(32 096871_32105475)_( 32212516_32214630) del | NCBI36 (hg18) | NC_000004.10 | Chr4 | 32,096,871 | 32,105,475 | 32,212,516 | 32,214,630 | ||
| nssv1558251 | Submitted genomic | NC_000004.10:g.(32 096871_32105475)_( 32212516_32214630) del | NCBI36 (hg18) | NC_000004.10 | Chr4 | 32,096,871 | 32,105,475 | 32,212,516 | 32,214,630 | ||
| nssv1578323 | Submitted genomic | NC_000004.10:g.(32 096871_32105475)_( 32212516_32214630) del | NCBI36 (hg18) | NC_000004.10 | Chr4 | 32,096,871 | 32,105,475 | 32,212,516 | 32,214,630 | ||
| nssv1580675 | Submitted genomic | NC_000004.10:g.(32 096871_32105475)_( 32212516_32214630) dup | NCBI36 (hg18) | NC_000004.10 | Chr4 | 32,096,871 | 32,105,475 | 32,212,516 | 32,214,630 | ||
| nssv1596742 | Submitted genomic | NC_000004.10:g.(32 096871_32105475)_( 32212516_32214630) del | NCBI36 (hg18) | NC_000004.10 | Chr4 | 32,096,871 | 32,105,475 | 32,212,516 | 32,214,630 |