nsv878857
- Organism: Homo sapiens
- Study:nstd71 (Xu et al. 2011)
- Variant Type:copy number variation
- Method Type:SNP array
- Submitted on:NCBI36 (hg18)
- Variant Calls:1
- Validation:Not tested
- Clinical Assertions: No
- Region Size:67,826
- Publication(s):Xu et al. 2011
Source: NCBI
- Genome View
- Variant Region Details and Evidence
- Validation Information
- Clinical Assertions
- Genotype Information
Genome View
Select assembly:Overlapping variant regions from other studies: 427 SVs from 69 studies. See in: genome view
Overlapping variant regions from other studies: 427 SVs from 69 studies. See in: genome view
Overlapping variant regions from other studies: 141 SVs from 19 studies. See in: genome view
Variant Region Placement Information
| Variant Region ID | Placement Type | Score | Assembly | Assembly Unit | Reciprocity | Sequence ID | Chr | Outer Start | Inner Start | Inner Stop | Outer Stop |
|---|---|---|---|---|---|---|---|---|---|---|---|
| nsv878857 | Remapped | Perfect | GRCh38.p12 | Primary Assembly | First Pass | NC_000004.12 | Chr4 | 32,508,282 | 32,513,643 | 32,569,660 | 32,576,107 |
| nsv878857 | Remapped | Perfect | GRCh37.p13 | Primary Assembly | First Pass | NC_000004.11 | Chr4 | 32,509,904 | 32,515,265 | 32,571,282 | 32,577,729 |
| nsv878857 | Submitted genomic | NCBI36 (hg18) | Primary Assembly | NC_000004.10 | Chr4 | 32,153,802 | 32,159,163 | 32,215,180 | 32,221,627 |
Variant Call Information
| Variant Call ID | Type | Sample ID | Method | Analysis | Other Calls in this Sample and Study |
|---|---|---|---|---|---|
| nssv1537287 | copy number loss | MS13154 | SNP array | SNP genotyping analysis | 35 |
Variant Call Placement Information
| Variant Call ID | Placement Type | Score | HGVS | Assembly | Reciprocity | Sequence ID | Chr | Outer Start | Inner Start | Inner Stop | Outer Stop |
|---|---|---|---|---|---|---|---|---|---|---|---|
| nssv1537287 | Remapped | Perfect | NC_000004.12:g.(32 508282_32513643)_( 32569660_32576107) del | GRCh38.p12 | First Pass | NC_000004.12 | Chr4 | 32,508,282 | 32,513,643 | 32,569,660 | 32,576,107 |
| nssv1537287 | Remapped | Perfect | NC_000004.11:g.(32 509904_32515265)_( 32571282_32577729) del | GRCh37.p13 | First Pass | NC_000004.11 | Chr4 | 32,509,904 | 32,515,265 | 32,571,282 | 32,577,729 |
| nssv1537287 | Submitted genomic | NC_000004.10:g.(32 153802_32159163)_( 32215180_32221627) del | NCBI36 (hg18) | NC_000004.10 | Chr4 | 32,153,802 | 32,159,163 | 32,215,180 | 32,221,627 |