nsv878864
- Organism: Homo sapiens
- Study:nstd71 (Xu et al. 2011)
- Variant Type:copy number variation
- Method Type:SNP array
- Submitted on:NCBI36 (hg18)
- Variant Calls:1
- Validation:Not tested
- Clinical Assertions: No
- Region Size:447,566
- Publication(s):Xu et al. 2011
Source: NCBI
- Genome View
- Variant Region Details and Evidence
- Validation Information
- Clinical Assertions
- Genotype Information
Genome View
Select assembly:Overlapping variant regions from other studies: 1190 SVs from 81 studies. See in: genome view
Overlapping variant regions from other studies: 1190 SVs from 81 studies. See in: genome view
Overlapping variant regions from other studies: 249 SVs from 25 studies. See in: genome view
Variant Region Placement Information
| Variant Region ID | Placement Type | Score | Assembly | Assembly Unit | Reciprocity | Sequence ID | Chr | Outer Start | Inner Start | Inner Stop | Outer Stop |
|---|---|---|---|---|---|---|---|---|---|---|---|
| nsv878864 | Remapped | Perfect | GRCh38.p12 | Primary Assembly | First Pass | NC_000004.12 | Chr4 | 33,204,570 | 33,216,014 | 33,640,992 | 33,652,135 |
| nsv878864 | Remapped | Perfect | GRCh37.p13 | Primary Assembly | First Pass | NC_000004.11 | Chr4 | 33,206,192 | 33,217,636 | 33,642,614 | 33,653,757 |
| nsv878864 | Submitted genomic | NCBI36 (hg18) | Primary Assembly | NC_000004.10 | Chr4 | 32,882,587 | 32,894,031 | 33,319,009 | 33,330,152 |
Variant Call Information
| Variant Call ID | Type | Sample ID | Method | Analysis | Other Calls in this Sample and Study |
|---|---|---|---|---|---|
| nssv1555213 | copy number loss | MS21242 | SNP array | SNP genotyping analysis | 14 |
Variant Call Placement Information
| Variant Call ID | Placement Type | Score | HGVS | Assembly | Reciprocity | Sequence ID | Chr | Outer Start | Inner Start | Inner Stop | Outer Stop |
|---|---|---|---|---|---|---|---|---|---|---|---|
| nssv1555213 | Remapped | Perfect | NC_000004.12:g.(33 204570_33216014)_( 33640992_33652135) del | GRCh38.p12 | First Pass | NC_000004.12 | Chr4 | 33,204,570 | 33,216,014 | 33,640,992 | 33,652,135 |
| nssv1555213 | Remapped | Perfect | NC_000004.11:g.(33 206192_33217636)_( 33642614_33653757) del | GRCh37.p13 | First Pass | NC_000004.11 | Chr4 | 33,206,192 | 33,217,636 | 33,642,614 | 33,653,757 |
| nssv1555213 | Submitted genomic | NC_000004.10:g.(32 882587_32894031)_( 33319009_33330152) del | NCBI36 (hg18) | NC_000004.10 | Chr4 | 32,882,587 | 32,894,031 | 33,319,009 | 33,330,152 |