nsv879028
- Organism: Homo sapiens
- Study:nstd71 (Xu et al. 2011)
- Variant Type:copy number variation
- Method Type:SNP array
- Submitted on:NCBI36 (hg18)
- Variant Calls:1
- Validation:Not tested
- Clinical Assertions: No
- Region Size:106,228
- Publication(s):Xu et al. 2011
Source: NCBI
- Genome View
- Variant Region Details and Evidence
- Validation Information
- Clinical Assertions
- Genotype Information
Genome View
Select assembly:Overlapping variant regions from other studies: 408 SVs from 65 studies. See in: genome view
Overlapping variant regions from other studies: 408 SVs from 65 studies. See in: genome view
Overlapping variant regions from other studies: 93 SVs from 21 studies. See in: genome view
Variant Region Placement Information
| Variant Region ID | Placement Type | Score | Assembly | Assembly Unit | Reciprocity | Sequence ID | Chr | Outer Start | Inner Start | Inner Stop | Outer Stop |
|---|---|---|---|---|---|---|---|---|---|---|---|
| nsv879028 | Remapped | Perfect | GRCh38.p12 | Primary Assembly | First Pass | NC_000004.12 | Chr4 | 57,796,061 | 57,796,854 | 57,892,660 | 57,902,288 |
| nsv879028 | Remapped | Perfect | GRCh37.p13 | Primary Assembly | First Pass | NC_000004.11 | Chr4 | 58,662,227 | 58,663,020 | 58,758,826 | 58,768,454 |
| nsv879028 | Submitted genomic | NCBI36 (hg18) | Primary Assembly | NC_000004.10 | Chr4 | 58,356,984 | 58,357,777 | 58,453,583 | 58,463,211 |
Variant Call Information
| Variant Call ID | Type | Sample ID | Method | Analysis | Other Calls in this Sample and Study |
|---|---|---|---|---|---|
| nssv1536976 | copy number gain | MS13045 | SNP array | SNP genotyping analysis | 8 |
Variant Call Placement Information
| Variant Call ID | Placement Type | Score | HGVS | Assembly | Reciprocity | Sequence ID | Chr | Outer Start | Inner Start | Inner Stop | Outer Stop |
|---|---|---|---|---|---|---|---|---|---|---|---|
| nssv1536976 | Remapped | Perfect | NC_000004.12:g.(57 796061_57796854)_( 57892660_57902288) dup | GRCh38.p12 | First Pass | NC_000004.12 | Chr4 | 57,796,061 | 57,796,854 | 57,892,660 | 57,902,288 |
| nssv1536976 | Remapped | Perfect | NC_000004.11:g.(58 662227_58663020)_( 58758826_58768454) dup | GRCh37.p13 | First Pass | NC_000004.11 | Chr4 | 58,662,227 | 58,663,020 | 58,758,826 | 58,768,454 |
| nssv1536976 | Submitted genomic | NC_000004.10:g.(58 356984_58357777)_( 58453583_58463211) dup | NCBI36 (hg18) | NC_000004.10 | Chr4 | 58,356,984 | 58,357,777 | 58,453,583 | 58,463,211 |