nsv879102
- Organism: Homo sapiens
- Study:nstd71 (Xu et al. 2011)
- Variant Type:copy number variation
- Method Type:SNP array
- Submitted on:NCBI36 (hg18)
- Variant Calls:1
- Validation:Not tested
- Clinical Assertions: No
- Region Size:201,559
- Publication(s):Xu et al. 2011
Source: NCBI
- Genome View
- Variant Region Details and Evidence
- Validation Information
- Clinical Assertions
- Genotype Information
Genome View
Select assembly:Overlapping variant regions from other studies: 1011 SVs from 84 studies. See in: genome view
Overlapping variant regions from other studies: 1011 SVs from 84 studies. See in: genome view
Overlapping variant regions from other studies: 325 SVs from 25 studies. See in: genome view
Variant Region Placement Information
| Variant Region ID | Placement Type | Score | Assembly | Assembly Unit | Reciprocity | Sequence ID | Chr | Outer Start | Inner Start | Inner Stop | Outer Stop |
|---|---|---|---|---|---|---|---|---|---|---|---|
| nsv879102 | Remapped | Perfect | GRCh38.p12 | Primary Assembly | First Pass | NC_000004.12 | Chr4 | 63,630,320 | 63,640,234 | 63,802,459 | 63,831,878 |
| nsv879102 | Remapped | Perfect | GRCh37.p13 | Primary Assembly | First Pass | NC_000004.11 | Chr4 | 64,496,038 | 64,505,952 | 64,668,177 | 64,697,596 |
| nsv879102 | Submitted genomic | NCBI36 (hg18) | Primary Assembly | NC_000004.10 | Chr4 | 64,178,633 | 64,188,547 | 64,350,772 | 64,380,191 |
Variant Call Information
| Variant Call ID | Type | Sample ID | Method | Analysis | Other Calls in this Sample and Study |
|---|---|---|---|---|---|
| nssv1551732 | copy number loss | MS18978 | SNP array | SNP genotyping analysis | 145 |
Variant Call Placement Information
| Variant Call ID | Placement Type | Score | HGVS | Assembly | Reciprocity | Sequence ID | Chr | Outer Start | Inner Start | Inner Stop | Outer Stop |
|---|---|---|---|---|---|---|---|---|---|---|---|
| nssv1551732 | Remapped | Perfect | NC_000004.12:g.(63 630320_63640234)_( 63802459_63831878) del | GRCh38.p12 | First Pass | NC_000004.12 | Chr4 | 63,630,320 | 63,640,234 | 63,802,459 | 63,831,878 |
| nssv1551732 | Remapped | Perfect | NC_000004.11:g.(64 496038_64505952)_( 64668177_64697596) del | GRCh37.p13 | First Pass | NC_000004.11 | Chr4 | 64,496,038 | 64,505,952 | 64,668,177 | 64,697,596 |
| nssv1551732 | Submitted genomic | NC_000004.10:g.(64 178633_64188547)_( 64350772_64380191) del | NCBI36 (hg18) | NC_000004.10 | Chr4 | 64,178,633 | 64,188,547 | 64,350,772 | 64,380,191 |