nsv879112
- Organism: Homo sapiens
- Study:nstd71 (Xu et al. 2011)
- Variant Type:copy number variation
- Method Type:SNP array
- Submitted on:NCBI36 (hg18)
- Variant Calls:1
- Validation:Not tested
- Clinical Assertions: No
- Region Size:561,484
- Publication(s):Xu et al. 2011
Source: NCBI
- Genome View
- Variant Region Details and Evidence
- Validation Information
- Clinical Assertions
- Genotype Information
Genome View
Select assembly:Overlapping variant regions from other studies: 2226 SVs from 97 studies. See in: genome view
Overlapping variant regions from other studies: 2226 SVs from 97 studies. See in: genome view
Overlapping variant regions from other studies: 689 SVs from 30 studies. See in: genome view
Variant Region Placement Information
| Variant Region ID | Placement Type | Score | Assembly | Assembly Unit | Reciprocity | Sequence ID | Chr | Outer Start | Inner Start | Inner Stop | Outer Stop |
|---|---|---|---|---|---|---|---|---|---|---|---|
| nsv879112 | Remapped | Perfect | GRCh38.p12 | Primary Assembly | First Pass | NC_000004.12 | Chr4 | 63,707,585 | 63,765,704 | 64,251,533 | 64,269,068 |
| nsv879112 | Remapped | Perfect | GRCh37.p13 | Primary Assembly | First Pass | NC_000004.11 | Chr4 | 64,573,303 | 64,631,422 | 65,117,251 | 65,134,786 |
| nsv879112 | Submitted genomic | NCBI36 (hg18) | Primary Assembly | NC_000004.10 | Chr4 | 64,255,898 | 64,314,017 | 64,799,846 | 64,817,381 |
Variant Call Information
| Variant Call ID | Type | Sample ID | Method | Analysis | Other Calls in this Sample and Study |
|---|---|---|---|---|---|
| nssv1591664 | copy number loss | IS39011 | SNP array | SNP genotyping analysis | 162 |
Variant Call Placement Information
| Variant Call ID | Placement Type | Score | HGVS | Assembly | Reciprocity | Sequence ID | Chr | Outer Start | Inner Start | Inner Stop | Outer Stop |
|---|---|---|---|---|---|---|---|---|---|---|---|
| nssv1591664 | Remapped | Perfect | NC_000004.12:g.(63 707585_63765704)_( 64251533_64269068) del | GRCh38.p12 | First Pass | NC_000004.12 | Chr4 | 63,707,585 | 63,765,704 | 64,251,533 | 64,269,068 |
| nssv1591664 | Remapped | Perfect | NC_000004.11:g.(64 573303_64631422)_( 65117251_65134786) del | GRCh37.p13 | First Pass | NC_000004.11 | Chr4 | 64,573,303 | 64,631,422 | 65,117,251 | 65,134,786 |
| nssv1591664 | Submitted genomic | NC_000004.10:g.(64 255898_64314017)_( 64799846_64817381) del | NCBI36 (hg18) | NC_000004.10 | Chr4 | 64,255,898 | 64,314,017 | 64,799,846 | 64,817,381 |