nsv879257
- Organism: Homo sapiens
- Study:nstd71 (Xu et al. 2011)
- Variant Type:copy number variation
- Method Type:SNP array
- Submitted on:NCBI36 (hg18)
- Variant Calls:16
- Validation:Not tested
- Clinical Assertions: No
- Region Size:162,545
- Publication(s):Xu et al. 2011
Source: NCBI
- Genome View
- Variant Region Details and Evidence
- Validation Information
- Clinical Assertions
- Genotype Information
Genome View
Select assembly:Overlapping variant regions from other studies: 2081 SVs from 95 studies. See in: genome view
Overlapping variant regions from other studies: 2081 SVs from 95 studies. See in: genome view
Overlapping variant regions from other studies: 1126 SVs from 35 studies. See in: genome view
Variant Region Placement Information
| Variant Region ID | Placement Type | Score | Assembly | Assembly Unit | Reciprocity | Sequence ID | Chr | Outer Start | Inner Start | Inner Stop | Outer Stop |
|---|---|---|---|---|---|---|---|---|---|---|---|
| nsv879257 | Remapped | Perfect | GRCh38.p12 | Primary Assembly | First Pass | NC_000004.12 | Chr4 | 68,499,144 | 68,516,362 | 68,647,187 | 68,661,688 |
| nsv879257 | Remapped | Perfect | GRCh37.p13 | Primary Assembly | First Pass | NC_000004.11 | Chr4 | 69,364,862 | 69,382,080 | 69,512,905 | 69,527,406 |
| nsv879257 | Submitted genomic | NCBI36 (hg18) | Primary Assembly | NC_000004.10 | Chr4 | 69,047,457 | 69,064,675 | 69,195,500 | 69,210,001 |
Variant Call Information
| Variant Call ID | Type | Sample ID | Method | Analysis | Other Calls in this Sample and Study |
|---|---|---|---|---|---|
| nssv1531561 | copy number gain | MS10545 | SNP array | SNP genotyping analysis | 9 |
| nssv1535149 | copy number gain | MS12041 | SNP array | SNP genotyping analysis | 8 |
| nssv1536697 | copy number gain | MS12913 | SNP array | SNP genotyping analysis | 10 |
| nssv1540398 | copy number gain | MS14828 | SNP array | SNP genotyping analysis | 9 |
| nssv1542193 | copy number gain | MS15704 | SNP array | SNP genotyping analysis | 32 |
| nssv1543895 | copy number gain | MS16153 | SNP array | SNP genotyping analysis | 569 |
| nssv1544121 | copy number gain | MS16265 | SNP array | SNP genotyping analysis | 7 |
| nssv1547407 | copy number gain | MS17371 | SNP array | SNP genotyping analysis | 12 |
| nssv1551630 | copy number gain | MS18956 | SNP array | SNP genotyping analysis | 15 |
| nssv1552215 | copy number gain | MS19289 | SNP array | SNP genotyping analysis | 8 |
| nssv1552914 | copy number gain | MS19638 | SNP array | SNP genotyping analysis | 16 |
| nssv1567809 | copy number gain | IS31147 | SNP array | SNP genotyping analysis | 12 |
| nssv1575362 | copy number gain | IS33721 | SNP array | SNP genotyping analysis | 12 |
| nssv1578629 | copy number gain | IS34821 | SNP array | SNP genotyping analysis | 8 |
| nssv1584751 | copy number gain | IS37167 | SNP array | SNP genotyping analysis | 8 |
| nssv1598317 | copy number gain | IS40849 | SNP array | SNP genotyping analysis | 12 |
Variant Call Placement Information
| Variant Call ID | Placement Type | Score | HGVS | Assembly | Reciprocity | Sequence ID | Chr | Outer Start | Inner Start | Inner Stop | Outer Stop |
|---|---|---|---|---|---|---|---|---|---|---|---|
| nssv1531561 | Remapped | Perfect | NC_000004.12:g.(68 499144_68516362)_( 68647187_68661688) dup | GRCh38.p12 | First Pass | NC_000004.12 | Chr4 | 68,499,144 | 68,516,362 | 68,647,187 | 68,661,688 |
| nssv1535149 | Remapped | Perfect | NC_000004.12:g.(68 499144_68516362)_( 68647187_68661688) dup | GRCh38.p12 | First Pass | NC_000004.12 | Chr4 | 68,499,144 | 68,516,362 | 68,647,187 | 68,661,688 |
| nssv1536697 | Remapped | Perfect | NC_000004.12:g.(68 499144_68516362)_( 68647187_68661688) dup | GRCh38.p12 | First Pass | NC_000004.12 | Chr4 | 68,499,144 | 68,516,362 | 68,647,187 | 68,661,688 |
| nssv1540398 | Remapped | Perfect | NC_000004.12:g.(68 499144_68516362)_( 68647187_68661688) dup | GRCh38.p12 | First Pass | NC_000004.12 | Chr4 | 68,499,144 | 68,516,362 | 68,647,187 | 68,661,688 |
| nssv1542193 | Remapped | Perfect | NC_000004.12:g.(68 499144_68516362)_( 68647187_68661688) dup | GRCh38.p12 | First Pass | NC_000004.12 | Chr4 | 68,499,144 | 68,516,362 | 68,647,187 | 68,661,688 |
| nssv1543895 | Remapped | Perfect | NC_000004.12:g.(68 499144_68516362)_( 68647187_68661688) dup | GRCh38.p12 | First Pass | NC_000004.12 | Chr4 | 68,499,144 | 68,516,362 | 68,647,187 | 68,661,688 |
| nssv1544121 | Remapped | Perfect | NC_000004.12:g.(68 499144_68516362)_( 68647187_68661688) dup | GRCh38.p12 | First Pass | NC_000004.12 | Chr4 | 68,499,144 | 68,516,362 | 68,647,187 | 68,661,688 |
| nssv1547407 | Remapped | Perfect | NC_000004.12:g.(68 499144_68516362)_( 68647187_68661688) dup | GRCh38.p12 | First Pass | NC_000004.12 | Chr4 | 68,499,144 | 68,516,362 | 68,647,187 | 68,661,688 |
| nssv1551630 | Remapped | Perfect | NC_000004.12:g.(68 499144_68516362)_( 68647187_68661688) dup | GRCh38.p12 | First Pass | NC_000004.12 | Chr4 | 68,499,144 | 68,516,362 | 68,647,187 | 68,661,688 |
| nssv1552215 | Remapped | Perfect | NC_000004.12:g.(68 499144_68516362)_( 68647187_68661688) dup | GRCh38.p12 | First Pass | NC_000004.12 | Chr4 | 68,499,144 | 68,516,362 | 68,647,187 | 68,661,688 |
| nssv1552914 | Remapped | Perfect | NC_000004.12:g.(68 499144_68516362)_( 68647187_68661688) dup | GRCh38.p12 | First Pass | NC_000004.12 | Chr4 | 68,499,144 | 68,516,362 | 68,647,187 | 68,661,688 |
| nssv1567809 | Remapped | Perfect | NC_000004.12:g.(68 499144_68516362)_( 68647187_68661688) dup | GRCh38.p12 | First Pass | NC_000004.12 | Chr4 | 68,499,144 | 68,516,362 | 68,647,187 | 68,661,688 |
| nssv1575362 | Remapped | Perfect | NC_000004.12:g.(68 499144_68516362)_( 68647187_68661688) dup | GRCh38.p12 | First Pass | NC_000004.12 | Chr4 | 68,499,144 | 68,516,362 | 68,647,187 | 68,661,688 |
| nssv1578629 | Remapped | Perfect | NC_000004.12:g.(68 499144_68516362)_( 68647187_68661688) dup | GRCh38.p12 | First Pass | NC_000004.12 | Chr4 | 68,499,144 | 68,516,362 | 68,647,187 | 68,661,688 |
| nssv1584751 | Remapped | Perfect | NC_000004.12:g.(68 499144_68516362)_( 68647187_68661688) dup | GRCh38.p12 | First Pass | NC_000004.12 | Chr4 | 68,499,144 | 68,516,362 | 68,647,187 | 68,661,688 |
| nssv1598317 | Remapped | Perfect | NC_000004.12:g.(68 499144_68516362)_( 68647187_68661688) dup | GRCh38.p12 | First Pass | NC_000004.12 | Chr4 | 68,499,144 | 68,516,362 | 68,647,187 | 68,661,688 |
| nssv1531561 | Remapped | Perfect | NC_000004.11:g.(69 364862_69382080)_( 69512905_69527406) dup | GRCh37.p13 | First Pass | NC_000004.11 | Chr4 | 69,364,862 | 69,382,080 | 69,512,905 | 69,527,406 |
| nssv1535149 | Remapped | Perfect | NC_000004.11:g.(69 364862_69382080)_( 69512905_69527406) dup | GRCh37.p13 | First Pass | NC_000004.11 | Chr4 | 69,364,862 | 69,382,080 | 69,512,905 | 69,527,406 |
| nssv1536697 | Remapped | Perfect | NC_000004.11:g.(69 364862_69382080)_( 69512905_69527406) dup | GRCh37.p13 | First Pass | NC_000004.11 | Chr4 | 69,364,862 | 69,382,080 | 69,512,905 | 69,527,406 |
| nssv1540398 | Remapped | Perfect | NC_000004.11:g.(69 364862_69382080)_( 69512905_69527406) dup | GRCh37.p13 | First Pass | NC_000004.11 | Chr4 | 69,364,862 | 69,382,080 | 69,512,905 | 69,527,406 |
| nssv1542193 | Remapped | Perfect | NC_000004.11:g.(69 364862_69382080)_( 69512905_69527406) dup | GRCh37.p13 | First Pass | NC_000004.11 | Chr4 | 69,364,862 | 69,382,080 | 69,512,905 | 69,527,406 |
| nssv1543895 | Remapped | Perfect | NC_000004.11:g.(69 364862_69382080)_( 69512905_69527406) dup | GRCh37.p13 | First Pass | NC_000004.11 | Chr4 | 69,364,862 | 69,382,080 | 69,512,905 | 69,527,406 |
| nssv1544121 | Remapped | Perfect | NC_000004.11:g.(69 364862_69382080)_( 69512905_69527406) dup | GRCh37.p13 | First Pass | NC_000004.11 | Chr4 | 69,364,862 | 69,382,080 | 69,512,905 | 69,527,406 |
| nssv1547407 | Remapped | Perfect | NC_000004.11:g.(69 364862_69382080)_( 69512905_69527406) dup | GRCh37.p13 | First Pass | NC_000004.11 | Chr4 | 69,364,862 | 69,382,080 | 69,512,905 | 69,527,406 |
| nssv1551630 | Remapped | Perfect | NC_000004.11:g.(69 364862_69382080)_( 69512905_69527406) dup | GRCh37.p13 | First Pass | NC_000004.11 | Chr4 | 69,364,862 | 69,382,080 | 69,512,905 | 69,527,406 |
| nssv1552215 | Remapped | Perfect | NC_000004.11:g.(69 364862_69382080)_( 69512905_69527406) dup | GRCh37.p13 | First Pass | NC_000004.11 | Chr4 | 69,364,862 | 69,382,080 | 69,512,905 | 69,527,406 |
| nssv1552914 | Remapped | Perfect | NC_000004.11:g.(69 364862_69382080)_( 69512905_69527406) dup | GRCh37.p13 | First Pass | NC_000004.11 | Chr4 | 69,364,862 | 69,382,080 | 69,512,905 | 69,527,406 |
| nssv1567809 | Remapped | Perfect | NC_000004.11:g.(69 364862_69382080)_( 69512905_69527406) dup | GRCh37.p13 | First Pass | NC_000004.11 | Chr4 | 69,364,862 | 69,382,080 | 69,512,905 | 69,527,406 |
| nssv1575362 | Remapped | Perfect | NC_000004.11:g.(69 364862_69382080)_( 69512905_69527406) dup | GRCh37.p13 | First Pass | NC_000004.11 | Chr4 | 69,364,862 | 69,382,080 | 69,512,905 | 69,527,406 |
| nssv1578629 | Remapped | Perfect | NC_000004.11:g.(69 364862_69382080)_( 69512905_69527406) dup | GRCh37.p13 | First Pass | NC_000004.11 | Chr4 | 69,364,862 | 69,382,080 | 69,512,905 | 69,527,406 |
| nssv1584751 | Remapped | Perfect | NC_000004.11:g.(69 364862_69382080)_( 69512905_69527406) dup | GRCh37.p13 | First Pass | NC_000004.11 | Chr4 | 69,364,862 | 69,382,080 | 69,512,905 | 69,527,406 |
| nssv1598317 | Remapped | Perfect | NC_000004.11:g.(69 364862_69382080)_( 69512905_69527406) dup | GRCh37.p13 | First Pass | NC_000004.11 | Chr4 | 69,364,862 | 69,382,080 | 69,512,905 | 69,527,406 |
| nssv1531561 | Submitted genomic | NC_000004.10:g.(69 047457_69064675)_( 69195500_69210001) dup | NCBI36 (hg18) | NC_000004.10 | Chr4 | 69,047,457 | 69,064,675 | 69,195,500 | 69,210,001 | ||
| nssv1535149 | Submitted genomic | NC_000004.10:g.(69 047457_69064675)_( 69195500_69210001) dup | NCBI36 (hg18) | NC_000004.10 | Chr4 | 69,047,457 | 69,064,675 | 69,195,500 | 69,210,001 | ||
| nssv1536697 | Submitted genomic | NC_000004.10:g.(69 047457_69064675)_( 69195500_69210001) dup | NCBI36 (hg18) | NC_000004.10 | Chr4 | 69,047,457 | 69,064,675 | 69,195,500 | 69,210,001 | ||
| nssv1540398 | Submitted genomic | NC_000004.10:g.(69 047457_69064675)_( 69195500_69210001) dup | NCBI36 (hg18) | NC_000004.10 | Chr4 | 69,047,457 | 69,064,675 | 69,195,500 | 69,210,001 | ||
| nssv1542193 | Submitted genomic | NC_000004.10:g.(69 047457_69064675)_( 69195500_69210001) dup | NCBI36 (hg18) | NC_000004.10 | Chr4 | 69,047,457 | 69,064,675 | 69,195,500 | 69,210,001 | ||
| nssv1543895 | Submitted genomic | NC_000004.10:g.(69 047457_69064675)_( 69195500_69210001) dup | NCBI36 (hg18) | NC_000004.10 | Chr4 | 69,047,457 | 69,064,675 | 69,195,500 | 69,210,001 | ||
| nssv1544121 | Submitted genomic | NC_000004.10:g.(69 047457_69064675)_( 69195500_69210001) dup | NCBI36 (hg18) | NC_000004.10 | Chr4 | 69,047,457 | 69,064,675 | 69,195,500 | 69,210,001 | ||
| nssv1547407 | Submitted genomic | NC_000004.10:g.(69 047457_69064675)_( 69195500_69210001) dup | NCBI36 (hg18) | NC_000004.10 | Chr4 | 69,047,457 | 69,064,675 | 69,195,500 | 69,210,001 | ||
| nssv1551630 | Submitted genomic | NC_000004.10:g.(69 047457_69064675)_( 69195500_69210001) dup | NCBI36 (hg18) | NC_000004.10 | Chr4 | 69,047,457 | 69,064,675 | 69,195,500 | 69,210,001 | ||
| nssv1552215 | Submitted genomic | NC_000004.10:g.(69 047457_69064675)_( 69195500_69210001) dup | NCBI36 (hg18) | NC_000004.10 | Chr4 | 69,047,457 | 69,064,675 | 69,195,500 | 69,210,001 | ||
| nssv1552914 | Submitted genomic | NC_000004.10:g.(69 047457_69064675)_( 69195500_69210001) dup | NCBI36 (hg18) | NC_000004.10 | Chr4 | 69,047,457 | 69,064,675 | 69,195,500 | 69,210,001 | ||
| nssv1567809 | Submitted genomic | NC_000004.10:g.(69 047457_69064675)_( 69195500_69210001) dup | NCBI36 (hg18) | NC_000004.10 | Chr4 | 69,047,457 | 69,064,675 | 69,195,500 | 69,210,001 | ||
| nssv1575362 | Submitted genomic | NC_000004.10:g.(69 047457_69064675)_( 69195500_69210001) dup | NCBI36 (hg18) | NC_000004.10 | Chr4 | 69,047,457 | 69,064,675 | 69,195,500 | 69,210,001 | ||
| nssv1578629 | Submitted genomic | NC_000004.10:g.(69 047457_69064675)_( 69195500_69210001) dup | NCBI36 (hg18) | NC_000004.10 | Chr4 | 69,047,457 | 69,064,675 | 69,195,500 | 69,210,001 | ||
| nssv1584751 | Submitted genomic | NC_000004.10:g.(69 047457_69064675)_( 69195500_69210001) dup | NCBI36 (hg18) | NC_000004.10 | Chr4 | 69,047,457 | 69,064,675 | 69,195,500 | 69,210,001 | ||
| nssv1598317 | Submitted genomic | NC_000004.10:g.(69 047457_69064675)_( 69195500_69210001) dup | NCBI36 (hg18) | NC_000004.10 | Chr4 | 69,047,457 | 69,064,675 | 69,195,500 | 69,210,001 |