nsv879357
- Organism: Homo sapiens
- Study:nstd71 (Xu et al. 2011)
- Variant Type:copy number variation
- Method Type:SNP array
- Submitted on:NCBI36 (hg18)
- Variant Calls:23
- Validation:Not tested
- Clinical Assertions: No
- Region Size:50,426
- Publication(s):Xu et al. 2011
Source: NCBI
- Genome View
- Variant Region Details and Evidence
- Validation Information
- Clinical Assertions
- Genotype Information
Genome View
Select assembly:Overlapping variant regions from other studies: 1561 SVs from 87 studies. See in: genome view
Overlapping variant regions from other studies: 1561 SVs from 87 studies. See in: genome view
Overlapping variant regions from other studies: 949 SVs from 35 studies. See in: genome view
Variant Region Placement Information
Variant Region ID | Placement Type | Score | Assembly | Assembly Unit | Reciprocity | Sequence ID | Chr | Outer Start | Inner Start | Inner Stop | Outer Stop |
---|---|---|---|---|---|---|---|---|---|---|---|
nsv879357 | Remapped | Perfect | GRCh38.p12 | Primary Assembly | First Pass | NC_000004.12 | Chr4 | 68,581,133 | 68,583,645 | 68,614,875 | 68,631,558 |
nsv879357 | Remapped | Perfect | GRCh37.p13 | Primary Assembly | First Pass | NC_000004.11 | Chr4 | 69,446,851 | 69,449,363 | 69,480,593 | 69,497,276 |
nsv879357 | Submitted genomic | NCBI36 (hg18) | Primary Assembly | NC_000004.10 | Chr4 | 69,129,446 | 69,131,958 | 69,163,188 | 69,179,871 |
Variant Call Information
Variant Call ID | Type | Sample ID | Method | Analysis | Other Calls in this Sample and Study |
---|---|---|---|---|---|
nssv1552622 | copy number gain | MS19553 | SNP array | SNP genotyping analysis | 10 |
nssv1564755 | copy number gain | IS30294 | SNP array | SNP genotyping analysis | 15 |
nssv1570910 | copy number gain | IS32329 | SNP array | SNP genotyping analysis | 11 |
nssv1572505 | copy number gain | IS33087 | SNP array | SNP genotyping analysis | 13 |
nssv1575478 | copy number gain | IS33749 | SNP array | SNP genotyping analysis | 8 |
nssv1576065 | copy number gain | IS33865 | SNP array | SNP genotyping analysis | 11 |
nssv1582272 | copy number gain | IS35895 | SNP array | SNP genotyping analysis | 13 |
nssv1584075 | copy number gain | IS36798 | SNP array | SNP genotyping analysis | 10 |
nssv1584533 | copy number gain | IS37062 | SNP array | SNP genotyping analysis | 9 |
nssv1586551 | copy number gain | IS37860 | SNP array | SNP genotyping analysis | 15 |
nssv1588089 | copy number gain | IS38152 | SNP array | SNP genotyping analysis | 10 |
nssv1588428 | copy number loss | IS38198 | SNP array | SNP genotyping analysis | 13 |
nssv1588992 | copy number gain | IS38274 | SNP array | SNP genotyping analysis | 11 |
nssv1591183 | copy number gain | IS38649 | SNP array | SNP genotyping analysis | 9 |
nssv1591535 | copy number gain | IS38972 | SNP array | SNP genotyping analysis | 14 |
nssv1593709 | copy number gain | IS39499 | SNP array | SNP genotyping analysis | 5 |
nssv1595250 | copy number gain | IS40192 | SNP array | SNP genotyping analysis | 11 |
nssv1595523 | copy number gain | IS40245 | SNP array | SNP genotyping analysis | 10 |
nssv1596795 | copy number gain | IS40643 | SNP array | SNP genotyping analysis | 15 |
nssv1597651 | copy number gain | IS40956 | SNP array | SNP genotyping analysis | 16 |
nssv1597894 | copy number gain | IS40802 | SNP array | SNP genotyping analysis | 9 |
nssv1598042 | copy number gain | IS40874 | SNP array | SNP genotyping analysis | 14 |
nssv1599246 | copy number gain | IS41497 | SNP array | SNP genotyping analysis | 12 |
Variant Call Placement Information
Variant Call ID | Placement Type | Score | HGVS | Assembly | Reciprocity | Sequence ID | Chr | Outer Start | Inner Start | Inner Stop | Outer Stop |
---|---|---|---|---|---|---|---|---|---|---|---|
nssv1552622 | Remapped | Perfect | NC_000004.12:g.(68 581133_68583645)_( 68614875_68631558) dup | GRCh38.p12 | First Pass | NC_000004.12 | Chr4 | 68,581,133 | 68,583,645 | 68,614,875 | 68,631,558 |
nssv1564755 | Remapped | Perfect | NC_000004.12:g.(68 581133_68583645)_( 68614875_68631558) dup | GRCh38.p12 | First Pass | NC_000004.12 | Chr4 | 68,581,133 | 68,583,645 | 68,614,875 | 68,631,558 |
nssv1570910 | Remapped | Perfect | NC_000004.12:g.(68 581133_68583645)_( 68614875_68631558) dup | GRCh38.p12 | First Pass | NC_000004.12 | Chr4 | 68,581,133 | 68,583,645 | 68,614,875 | 68,631,558 |
nssv1572505 | Remapped | Perfect | NC_000004.12:g.(68 581133_68583645)_( 68614875_68631558) dup | GRCh38.p12 | First Pass | NC_000004.12 | Chr4 | 68,581,133 | 68,583,645 | 68,614,875 | 68,631,558 |
nssv1575478 | Remapped | Perfect | NC_000004.12:g.(68 581133_68583645)_( 68614875_68631558) dup | GRCh38.p12 | First Pass | NC_000004.12 | Chr4 | 68,581,133 | 68,583,645 | 68,614,875 | 68,631,558 |
nssv1576065 | Remapped | Perfect | NC_000004.12:g.(68 581133_68583645)_( 68614875_68631558) dup | GRCh38.p12 | First Pass | NC_000004.12 | Chr4 | 68,581,133 | 68,583,645 | 68,614,875 | 68,631,558 |
nssv1582272 | Remapped | Perfect | NC_000004.12:g.(68 581133_68583645)_( 68614875_68631558) dup | GRCh38.p12 | First Pass | NC_000004.12 | Chr4 | 68,581,133 | 68,583,645 | 68,614,875 | 68,631,558 |
nssv1584075 | Remapped | Perfect | NC_000004.12:g.(68 581133_68583645)_( 68614875_68631558) dup | GRCh38.p12 | First Pass | NC_000004.12 | Chr4 | 68,581,133 | 68,583,645 | 68,614,875 | 68,631,558 |
nssv1584533 | Remapped | Perfect | NC_000004.12:g.(68 581133_68583645)_( 68614875_68631558) dup | GRCh38.p12 | First Pass | NC_000004.12 | Chr4 | 68,581,133 | 68,583,645 | 68,614,875 | 68,631,558 |
nssv1586551 | Remapped | Perfect | NC_000004.12:g.(68 581133_68583645)_( 68614875_68631558) dup | GRCh38.p12 | First Pass | NC_000004.12 | Chr4 | 68,581,133 | 68,583,645 | 68,614,875 | 68,631,558 |
nssv1588089 | Remapped | Perfect | NC_000004.12:g.(68 581133_68583645)_( 68614875_68631558) dup | GRCh38.p12 | First Pass | NC_000004.12 | Chr4 | 68,581,133 | 68,583,645 | 68,614,875 | 68,631,558 |
nssv1588428 | Remapped | Perfect | NC_000004.12:g.(68 581133_68583645)_( 68614875_68631558) del | GRCh38.p12 | First Pass | NC_000004.12 | Chr4 | 68,581,133 | 68,583,645 | 68,614,875 | 68,631,558 |
nssv1588992 | Remapped | Perfect | NC_000004.12:g.(68 581133_68583645)_( 68614875_68631558) dup | GRCh38.p12 | First Pass | NC_000004.12 | Chr4 | 68,581,133 | 68,583,645 | 68,614,875 | 68,631,558 |
nssv1591183 | Remapped | Perfect | NC_000004.12:g.(68 581133_68583645)_( 68614875_68631558) dup | GRCh38.p12 | First Pass | NC_000004.12 | Chr4 | 68,581,133 | 68,583,645 | 68,614,875 | 68,631,558 |
nssv1591535 | Remapped | Perfect | NC_000004.12:g.(68 581133_68583645)_( 68614875_68631558) dup | GRCh38.p12 | First Pass | NC_000004.12 | Chr4 | 68,581,133 | 68,583,645 | 68,614,875 | 68,631,558 |
nssv1593709 | Remapped | Perfect | NC_000004.12:g.(68 581133_68583645)_( 68614875_68631558) dup | GRCh38.p12 | First Pass | NC_000004.12 | Chr4 | 68,581,133 | 68,583,645 | 68,614,875 | 68,631,558 |
nssv1595250 | Remapped | Perfect | NC_000004.12:g.(68 581133_68583645)_( 68614875_68631558) dup | GRCh38.p12 | First Pass | NC_000004.12 | Chr4 | 68,581,133 | 68,583,645 | 68,614,875 | 68,631,558 |
nssv1595523 | Remapped | Perfect | NC_000004.12:g.(68 581133_68583645)_( 68614875_68631558) dup | GRCh38.p12 | First Pass | NC_000004.12 | Chr4 | 68,581,133 | 68,583,645 | 68,614,875 | 68,631,558 |
nssv1596795 | Remapped | Perfect | NC_000004.12:g.(68 581133_68583645)_( 68614875_68631558) dup | GRCh38.p12 | First Pass | NC_000004.12 | Chr4 | 68,581,133 | 68,583,645 | 68,614,875 | 68,631,558 |
nssv1597651 | Remapped | Perfect | NC_000004.12:g.(68 581133_68583645)_( 68614875_68631558) dup | GRCh38.p12 | First Pass | NC_000004.12 | Chr4 | 68,581,133 | 68,583,645 | 68,614,875 | 68,631,558 |
nssv1597894 | Remapped | Perfect | NC_000004.12:g.(68 581133_68583645)_( 68614875_68631558) dup | GRCh38.p12 | First Pass | NC_000004.12 | Chr4 | 68,581,133 | 68,583,645 | 68,614,875 | 68,631,558 |
nssv1598042 | Remapped | Perfect | NC_000004.12:g.(68 581133_68583645)_( 68614875_68631558) dup | GRCh38.p12 | First Pass | NC_000004.12 | Chr4 | 68,581,133 | 68,583,645 | 68,614,875 | 68,631,558 |
nssv1599246 | Remapped | Perfect | NC_000004.12:g.(68 581133_68583645)_( 68614875_68631558) dup | GRCh38.p12 | First Pass | NC_000004.12 | Chr4 | 68,581,133 | 68,583,645 | 68,614,875 | 68,631,558 |
nssv1552622 | Remapped | Perfect | NC_000004.11:g.(69 446851_69449363)_( 69480593_69497276) dup | GRCh37.p13 | First Pass | NC_000004.11 | Chr4 | 69,446,851 | 69,449,363 | 69,480,593 | 69,497,276 |
nssv1564755 | Remapped | Perfect | NC_000004.11:g.(69 446851_69449363)_( 69480593_69497276) dup | GRCh37.p13 | First Pass | NC_000004.11 | Chr4 | 69,446,851 | 69,449,363 | 69,480,593 | 69,497,276 |
nssv1570910 | Remapped | Perfect | NC_000004.11:g.(69 446851_69449363)_( 69480593_69497276) dup | GRCh37.p13 | First Pass | NC_000004.11 | Chr4 | 69,446,851 | 69,449,363 | 69,480,593 | 69,497,276 |
nssv1572505 | Remapped | Perfect | NC_000004.11:g.(69 446851_69449363)_( 69480593_69497276) dup | GRCh37.p13 | First Pass | NC_000004.11 | Chr4 | 69,446,851 | 69,449,363 | 69,480,593 | 69,497,276 |
nssv1575478 | Remapped | Perfect | NC_000004.11:g.(69 446851_69449363)_( 69480593_69497276) dup | GRCh37.p13 | First Pass | NC_000004.11 | Chr4 | 69,446,851 | 69,449,363 | 69,480,593 | 69,497,276 |
nssv1576065 | Remapped | Perfect | NC_000004.11:g.(69 446851_69449363)_( 69480593_69497276) dup | GRCh37.p13 | First Pass | NC_000004.11 | Chr4 | 69,446,851 | 69,449,363 | 69,480,593 | 69,497,276 |
nssv1582272 | Remapped | Perfect | NC_000004.11:g.(69 446851_69449363)_( 69480593_69497276) dup | GRCh37.p13 | First Pass | NC_000004.11 | Chr4 | 69,446,851 | 69,449,363 | 69,480,593 | 69,497,276 |
nssv1584075 | Remapped | Perfect | NC_000004.11:g.(69 446851_69449363)_( 69480593_69497276) dup | GRCh37.p13 | First Pass | NC_000004.11 | Chr4 | 69,446,851 | 69,449,363 | 69,480,593 | 69,497,276 |
nssv1584533 | Remapped | Perfect | NC_000004.11:g.(69 446851_69449363)_( 69480593_69497276) dup | GRCh37.p13 | First Pass | NC_000004.11 | Chr4 | 69,446,851 | 69,449,363 | 69,480,593 | 69,497,276 |
nssv1586551 | Remapped | Perfect | NC_000004.11:g.(69 446851_69449363)_( 69480593_69497276) dup | GRCh37.p13 | First Pass | NC_000004.11 | Chr4 | 69,446,851 | 69,449,363 | 69,480,593 | 69,497,276 |
nssv1588089 | Remapped | Perfect | NC_000004.11:g.(69 446851_69449363)_( 69480593_69497276) dup | GRCh37.p13 | First Pass | NC_000004.11 | Chr4 | 69,446,851 | 69,449,363 | 69,480,593 | 69,497,276 |
nssv1588428 | Remapped | Perfect | NC_000004.11:g.(69 446851_69449363)_( 69480593_69497276) del | GRCh37.p13 | First Pass | NC_000004.11 | Chr4 | 69,446,851 | 69,449,363 | 69,480,593 | 69,497,276 |
nssv1588992 | Remapped | Perfect | NC_000004.11:g.(69 446851_69449363)_( 69480593_69497276) dup | GRCh37.p13 | First Pass | NC_000004.11 | Chr4 | 69,446,851 | 69,449,363 | 69,480,593 | 69,497,276 |
nssv1591183 | Remapped | Perfect | NC_000004.11:g.(69 446851_69449363)_( 69480593_69497276) dup | GRCh37.p13 | First Pass | NC_000004.11 | Chr4 | 69,446,851 | 69,449,363 | 69,480,593 | 69,497,276 |
nssv1591535 | Remapped | Perfect | NC_000004.11:g.(69 446851_69449363)_( 69480593_69497276) dup | GRCh37.p13 | First Pass | NC_000004.11 | Chr4 | 69,446,851 | 69,449,363 | 69,480,593 | 69,497,276 |
nssv1593709 | Remapped | Perfect | NC_000004.11:g.(69 446851_69449363)_( 69480593_69497276) dup | GRCh37.p13 | First Pass | NC_000004.11 | Chr4 | 69,446,851 | 69,449,363 | 69,480,593 | 69,497,276 |
nssv1595250 | Remapped | Perfect | NC_000004.11:g.(69 446851_69449363)_( 69480593_69497276) dup | GRCh37.p13 | First Pass | NC_000004.11 | Chr4 | 69,446,851 | 69,449,363 | 69,480,593 | 69,497,276 |
nssv1595523 | Remapped | Perfect | NC_000004.11:g.(69 446851_69449363)_( 69480593_69497276) dup | GRCh37.p13 | First Pass | NC_000004.11 | Chr4 | 69,446,851 | 69,449,363 | 69,480,593 | 69,497,276 |
nssv1596795 | Remapped | Perfect | NC_000004.11:g.(69 446851_69449363)_( 69480593_69497276) dup | GRCh37.p13 | First Pass | NC_000004.11 | Chr4 | 69,446,851 | 69,449,363 | 69,480,593 | 69,497,276 |
nssv1597651 | Remapped | Perfect | NC_000004.11:g.(69 446851_69449363)_( 69480593_69497276) dup | GRCh37.p13 | First Pass | NC_000004.11 | Chr4 | 69,446,851 | 69,449,363 | 69,480,593 | 69,497,276 |
nssv1597894 | Remapped | Perfect | NC_000004.11:g.(69 446851_69449363)_( 69480593_69497276) dup | GRCh37.p13 | First Pass | NC_000004.11 | Chr4 | 69,446,851 | 69,449,363 | 69,480,593 | 69,497,276 |
nssv1598042 | Remapped | Perfect | NC_000004.11:g.(69 446851_69449363)_( 69480593_69497276) dup | GRCh37.p13 | First Pass | NC_000004.11 | Chr4 | 69,446,851 | 69,449,363 | 69,480,593 | 69,497,276 |
nssv1599246 | Remapped | Perfect | NC_000004.11:g.(69 446851_69449363)_( 69480593_69497276) dup | GRCh37.p13 | First Pass | NC_000004.11 | Chr4 | 69,446,851 | 69,449,363 | 69,480,593 | 69,497,276 |
nssv1552622 | Submitted genomic | NC_000004.10:g.(69 129446_69131958)_( 69163188_69179871) dup | NCBI36 (hg18) | NC_000004.10 | Chr4 | 69,129,446 | 69,131,958 | 69,163,188 | 69,179,871 | ||
nssv1564755 | Submitted genomic | NC_000004.10:g.(69 129446_69131958)_( 69163188_69179871) dup | NCBI36 (hg18) | NC_000004.10 | Chr4 | 69,129,446 | 69,131,958 | 69,163,188 | 69,179,871 | ||
nssv1570910 | Submitted genomic | NC_000004.10:g.(69 129446_69131958)_( 69163188_69179871) dup | NCBI36 (hg18) | NC_000004.10 | Chr4 | 69,129,446 | 69,131,958 | 69,163,188 | 69,179,871 | ||
nssv1572505 | Submitted genomic | NC_000004.10:g.(69 129446_69131958)_( 69163188_69179871) dup | NCBI36 (hg18) | NC_000004.10 | Chr4 | 69,129,446 | 69,131,958 | 69,163,188 | 69,179,871 | ||
nssv1575478 | Submitted genomic | NC_000004.10:g.(69 129446_69131958)_( 69163188_69179871) dup | NCBI36 (hg18) | NC_000004.10 | Chr4 | 69,129,446 | 69,131,958 | 69,163,188 | 69,179,871 | ||
nssv1576065 | Submitted genomic | NC_000004.10:g.(69 129446_69131958)_( 69163188_69179871) dup | NCBI36 (hg18) | NC_000004.10 | Chr4 | 69,129,446 | 69,131,958 | 69,163,188 | 69,179,871 | ||
nssv1582272 | Submitted genomic | NC_000004.10:g.(69 129446_69131958)_( 69163188_69179871) dup | NCBI36 (hg18) | NC_000004.10 | Chr4 | 69,129,446 | 69,131,958 | 69,163,188 | 69,179,871 | ||
nssv1584075 | Submitted genomic | NC_000004.10:g.(69 129446_69131958)_( 69163188_69179871) dup | NCBI36 (hg18) | NC_000004.10 | Chr4 | 69,129,446 | 69,131,958 | 69,163,188 | 69,179,871 | ||
nssv1584533 | Submitted genomic | NC_000004.10:g.(69 129446_69131958)_( 69163188_69179871) dup | NCBI36 (hg18) | NC_000004.10 | Chr4 | 69,129,446 | 69,131,958 | 69,163,188 | 69,179,871 | ||
nssv1586551 | Submitted genomic | NC_000004.10:g.(69 129446_69131958)_( 69163188_69179871) dup | NCBI36 (hg18) | NC_000004.10 | Chr4 | 69,129,446 | 69,131,958 | 69,163,188 | 69,179,871 | ||
nssv1588089 | Submitted genomic | NC_000004.10:g.(69 129446_69131958)_( 69163188_69179871) dup | NCBI36 (hg18) | NC_000004.10 | Chr4 | 69,129,446 | 69,131,958 | 69,163,188 | 69,179,871 | ||
nssv1588428 | Submitted genomic | NC_000004.10:g.(69 129446_69131958)_( 69163188_69179871) del | NCBI36 (hg18) | NC_000004.10 | Chr4 | 69,129,446 | 69,131,958 | 69,163,188 | 69,179,871 | ||
nssv1588992 | Submitted genomic | NC_000004.10:g.(69 129446_69131958)_( 69163188_69179871) dup | NCBI36 (hg18) | NC_000004.10 | Chr4 | 69,129,446 | 69,131,958 | 69,163,188 | 69,179,871 | ||
nssv1591183 | Submitted genomic | NC_000004.10:g.(69 129446_69131958)_( 69163188_69179871) dup | NCBI36 (hg18) | NC_000004.10 | Chr4 | 69,129,446 | 69,131,958 | 69,163,188 | 69,179,871 | ||
nssv1591535 | Submitted genomic | NC_000004.10:g.(69 129446_69131958)_( 69163188_69179871) dup | NCBI36 (hg18) | NC_000004.10 | Chr4 | 69,129,446 | 69,131,958 | 69,163,188 | 69,179,871 | ||
nssv1593709 | Submitted genomic | NC_000004.10:g.(69 129446_69131958)_( 69163188_69179871) dup | NCBI36 (hg18) | NC_000004.10 | Chr4 | 69,129,446 | 69,131,958 | 69,163,188 | 69,179,871 | ||
nssv1595250 | Submitted genomic | NC_000004.10:g.(69 129446_69131958)_( 69163188_69179871) dup | NCBI36 (hg18) | NC_000004.10 | Chr4 | 69,129,446 | 69,131,958 | 69,163,188 | 69,179,871 | ||
nssv1595523 | Submitted genomic | NC_000004.10:g.(69 129446_69131958)_( 69163188_69179871) dup | NCBI36 (hg18) | NC_000004.10 | Chr4 | 69,129,446 | 69,131,958 | 69,163,188 | 69,179,871 | ||
nssv1596795 | Submitted genomic | NC_000004.10:g.(69 129446_69131958)_( 69163188_69179871) dup | NCBI36 (hg18) | NC_000004.10 | Chr4 | 69,129,446 | 69,131,958 | 69,163,188 | 69,179,871 | ||
nssv1597651 | Submitted genomic | NC_000004.10:g.(69 129446_69131958)_( 69163188_69179871) dup | NCBI36 (hg18) | NC_000004.10 | Chr4 | 69,129,446 | 69,131,958 | 69,163,188 | 69,179,871 | ||
nssv1597894 | Submitted genomic | NC_000004.10:g.(69 129446_69131958)_( 69163188_69179871) dup | NCBI36 (hg18) | NC_000004.10 | Chr4 | 69,129,446 | 69,131,958 | 69,163,188 | 69,179,871 | ||
nssv1598042 | Submitted genomic | NC_000004.10:g.(69 129446_69131958)_( 69163188_69179871) dup | NCBI36 (hg18) | NC_000004.10 | Chr4 | 69,129,446 | 69,131,958 | 69,163,188 | 69,179,871 | ||
nssv1599246 | Submitted genomic | NC_000004.10:g.(69 129446_69131958)_( 69163188_69179871) dup | NCBI36 (hg18) | NC_000004.10 | Chr4 | 69,129,446 | 69,131,958 | 69,163,188 | 69,179,871 |