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dbVar

Database of genomic structural variation

nsv879383

Organism: Homo sapiens

Study:nstd71 (Xu et al. 2011)
Variant Type:copy number variation
Method Type:SNP array
Submitted on:NCBI36 (hg18)

Variant Calls:6
Validation:Not tested
Clinical Assertions: No
Region Size:51,422

Publication(s):Xu et al. 2011

Links to Other Resources

Overlapping Genes

Source: NCBI

Genome View
Variant Region Details and Evidence
Validation Information
Clinical Assertions
Genotype Information

Genome View

Select assembly:

Overlapping variant regions from other studies: 401 SVs from 62 studies. See in: genome view

Remapped(Score: Perfect):69,129,791-69,181,212

Variant Region Placement Information

Variant Region ID	Placement Type	Score	Assembly	Assembly Unit	Reciprocity	Sequence ID	Chr	Outer Start	Inner Start	Inner Stop	Outer Stop
nsv879383	Remapped	Perfect	GRCh38.p12	Primary Assembly	First Pass	NC_000004.12	Chr4	69,129,791	69,137,075	69,172,029	69,181,212
nsv879383	Remapped	Perfect	GRCh37.p13	Primary Assembly	First Pass	NC_000004.11	Chr4	69,995,509	70,002,793	70,037,747	70,046,930
nsv879383	Submitted genomic		NCBI36 (hg18)	Primary Assembly		NC_000004.10	Chr4	70,030,098	70,037,382	70,072,336	70,081,519

Variant Call Information

Variant Call ID	Type	Sample ID	Method	Analysis	Other Calls in this Sample and Study
nssv1504817	copy number gain	SP52761	SNP array	SNP genotyping analysis	13
nssv1515120	copy number gain	SP56125	SNP array	SNP genotyping analysis	28
nssv1522570	copy number gain	SP53256	SNP array	SNP genotyping analysis	11
nssv1528639	copy number gain	SP81333	SNP array	SNP genotyping analysis	13
nssv1536606	copy number gain	MS12860	SNP array	SNP genotyping analysis	11
nssv1540503	copy number gain	MS14872	SNP array	SNP genotyping analysis	15

Variant Call Placement Information

Variant Call ID	Placement Type	Score	HGVS	Assembly	Reciprocity	Sequence ID	Chr	Outer Start	Inner Start	Inner Stop	Outer Stop
nssv1504817	Remapped	Perfect	NC_000004.12:g.(69 129791_69137075)_( 69172029_69181212) dup	GRCh38.p12	First Pass	NC_000004.12	Chr4	69,129,791	69,137,075	69,172,029	69,181,212
nssv1515120	Remapped	Perfect	NC_000004.12:g.(69 129791_69137075)_( 69172029_69181212) dup	GRCh38.p12	First Pass	NC_000004.12	Chr4	69,129,791	69,137,075	69,172,029	69,181,212
nssv1522570	Remapped	Perfect	NC_000004.12:g.(69 129791_69137075)_( 69172029_69181212) dup	GRCh38.p12	First Pass	NC_000004.12	Chr4	69,129,791	69,137,075	69,172,029	69,181,212
nssv1528639	Remapped	Perfect	NC_000004.12:g.(69 129791_69137075)_( 69172029_69181212) dup	GRCh38.p12	First Pass	NC_000004.12	Chr4	69,129,791	69,137,075	69,172,029	69,181,212
nssv1536606	Remapped	Perfect	NC_000004.12:g.(69 129791_69137075)_( 69172029_69181212) dup	GRCh38.p12	First Pass	NC_000004.12	Chr4	69,129,791	69,137,075	69,172,029	69,181,212
nssv1540503	Remapped	Perfect	NC_000004.12:g.(69 129791_69137075)_( 69172029_69181212) dup	GRCh38.p12	First Pass	NC_000004.12	Chr4	69,129,791	69,137,075	69,172,029	69,181,212
nssv1504817	Remapped	Perfect	NC_000004.11:g.(69 995509_70002793)_( 70037747_70046930) dup	GRCh37.p13	First Pass	NC_000004.11	Chr4	69,995,509	70,002,793	70,037,747	70,046,930
nssv1515120	Remapped	Perfect	NC_000004.11:g.(69 995509_70002793)_( 70037747_70046930) dup	GRCh37.p13	First Pass	NC_000004.11	Chr4	69,995,509	70,002,793	70,037,747	70,046,930
nssv1522570	Remapped	Perfect	NC_000004.11:g.(69 995509_70002793)_( 70037747_70046930) dup	GRCh37.p13	First Pass	NC_000004.11	Chr4	69,995,509	70,002,793	70,037,747	70,046,930
nssv1528639	Remapped	Perfect	NC_000004.11:g.(69 995509_70002793)_( 70037747_70046930) dup	GRCh37.p13	First Pass	NC_000004.11	Chr4	69,995,509	70,002,793	70,037,747	70,046,930
nssv1536606	Remapped	Perfect	NC_000004.11:g.(69 995509_70002793)_( 70037747_70046930) dup	GRCh37.p13	First Pass	NC_000004.11	Chr4	69,995,509	70,002,793	70,037,747	70,046,930
nssv1540503	Remapped	Perfect	NC_000004.11:g.(69 995509_70002793)_( 70037747_70046930) dup	GRCh37.p13	First Pass	NC_000004.11	Chr4	69,995,509	70,002,793	70,037,747	70,046,930
nssv1504817	Submitted genomic		NC_000004.10:g.(70 030098_70037382)_( 70072336_70081519) dup	NCBI36 (hg18)		NC_000004.10	Chr4	70,030,098	70,037,382	70,072,336	70,081,519
nssv1515120	Submitted genomic		NC_000004.10:g.(70 030098_70037382)_( 70072336_70081519) dup	NCBI36 (hg18)		NC_000004.10	Chr4	70,030,098	70,037,382	70,072,336	70,081,519
nssv1522570	Submitted genomic		NC_000004.10:g.(70 030098_70037382)_( 70072336_70081519) dup	NCBI36 (hg18)		NC_000004.10	Chr4	70,030,098	70,037,382	70,072,336	70,081,519
nssv1528639	Submitted genomic		NC_000004.10:g.(70 030098_70037382)_( 70072336_70081519) dup	NCBI36 (hg18)		NC_000004.10	Chr4	70,030,098	70,037,382	70,072,336	70,081,519
nssv1536606	Submitted genomic		NC_000004.10:g.(70 030098_70037382)_( 70072336_70081519) dup	NCBI36 (hg18)		NC_000004.10	Chr4	70,030,098	70,037,382	70,072,336	70,081,519
nssv1540503	Submitted genomic		NC_000004.10:g.(70 030098_70037382)_( 70072336_70081519) dup	NCBI36 (hg18)		NC_000004.10	Chr4	70,030,098	70,037,382	70,072,336	70,081,519

No validation data were submitted for this variant

No clinical assertion data were submitted for this variant

No genotype data were submitted for this variant

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