nsv879418
- Organism: Homo sapiens
- Study:nstd71 (Xu et al. 2011)
- Variant Type:copy number variation
- Method Type:SNP array
- Submitted on:NCBI36 (hg18)
- Variant Calls:17
- Validation:Not tested
- Clinical Assertions: No
- Region Size:104,491
- Publication(s):Xu et al. 2011
Source: NCBI
- Genome View
- Variant Region Details and Evidence
- Validation Information
- Clinical Assertions
- Genotype Information
Genome View
Select assembly:Overlapping variant regions from other studies: 1346 SVs from 100 studies. See in: genome view
Overlapping variant regions from other studies: 1346 SVs from 100 studies. See in: genome view
Overlapping variant regions from other studies: 743 SVs from 35 studies. See in: genome view
Variant Region Placement Information
Variant Region ID | Placement Type | Score | Assembly | Assembly Unit | Reciprocity | Sequence ID | Chr | Outer Start | Inner Start | Inner Stop | Outer Stop |
---|---|---|---|---|---|---|---|---|---|---|---|
nsv879418 | Remapped | Perfect | GRCh38.p12 | Primary Assembly | First Pass | NC_000004.12 | Chr4 | 69,264,211 | 69,266,146 | 69,357,164 | 69,368,701 |
nsv879418 | Remapped | Perfect | GRCh37.p13 | Primary Assembly | First Pass | NC_000004.11 | Chr4 | 70,129,929 | 70,131,864 | 70,222,882 | 70,234,419 |
nsv879418 | Submitted genomic | NCBI36 (hg18) | Primary Assembly | NC_000004.10 | Chr4 | 70,164,518 | 70,166,453 | 70,257,471 | 70,269,008 |
Variant Call Information
Variant Call ID | Type | Sample ID | Method | Analysis | Other Calls in this Sample and Study |
---|---|---|---|---|---|
nssv1499263 | copy number loss | SP50521 | SNP array | SNP genotyping analysis | 28 |
nssv1499334 | copy number loss | SP50103 | SNP array | SNP genotyping analysis | 11 |
nssv1502304 | copy number gain | SP51062 | SNP array | SNP genotyping analysis | 10 |
nssv1503253 | copy number loss | SP52019 | SNP array | SNP genotyping analysis | 22 |
nssv1503627 | copy number loss | SP52082 | SNP array | SNP genotyping analysis | 15 |
nssv1503647 | copy number loss | SP52093 | SNP array | SNP genotyping analysis | 35 |
nssv1503751 | copy number loss | SP52109 | SNP array | SNP genotyping analysis | 18 |
nssv1505011 | copy number loss | SP53036 | SNP array | SNP genotyping analysis | 14 |
nssv1505037 | copy number loss | SP53041 | SNP array | SNP genotyping analysis | 60 |
nssv1506649 | copy number loss | SP54384 | SNP array | SNP genotyping analysis | 18 |
nssv1506667 | copy number loss | SP54389 | SNP array | SNP genotyping analysis | 19 |
nssv1506856 | copy number loss | SP54409 | SNP array | SNP genotyping analysis | 20 |
nssv1513666 | copy number loss | SP55822 | SNP array | SNP genotyping analysis | 16 |
nssv1515209 | copy number loss | SP56138 | SNP array | SNP genotyping analysis | 20 |
nssv1517559 | copy number loss | SP57322 | SNP array | SNP genotyping analysis | 21 |
nssv1518011 | copy number loss | SP57443 | SNP array | SNP genotyping analysis | 18 |
nssv1518359 | copy number loss | SP57507 | SNP array | SNP genotyping analysis | 16 |
Variant Call Placement Information
Variant Call ID | Placement Type | Score | HGVS | Assembly | Reciprocity | Sequence ID | Chr | Outer Start | Inner Start | Inner Stop | Outer Stop |
---|---|---|---|---|---|---|---|---|---|---|---|
nssv1499263 | Remapped | Perfect | NC_000004.12:g.(69 264211_69266146)_( 69357164_69368701) del | GRCh38.p12 | First Pass | NC_000004.12 | Chr4 | 69,264,211 | 69,266,146 | 69,357,164 | 69,368,701 |
nssv1499334 | Remapped | Perfect | NC_000004.12:g.(69 264211_69266146)_( 69357164_69368701) del | GRCh38.p12 | First Pass | NC_000004.12 | Chr4 | 69,264,211 | 69,266,146 | 69,357,164 | 69,368,701 |
nssv1502304 | Remapped | Perfect | NC_000004.12:g.(69 264211_69266146)_( 69357164_69368701) dup | GRCh38.p12 | First Pass | NC_000004.12 | Chr4 | 69,264,211 | 69,266,146 | 69,357,164 | 69,368,701 |
nssv1503253 | Remapped | Perfect | NC_000004.12:g.(69 264211_69266146)_( 69357164_69368701) del | GRCh38.p12 | First Pass | NC_000004.12 | Chr4 | 69,264,211 | 69,266,146 | 69,357,164 | 69,368,701 |
nssv1503627 | Remapped | Perfect | NC_000004.12:g.(69 264211_69266146)_( 69357164_69368701) del | GRCh38.p12 | First Pass | NC_000004.12 | Chr4 | 69,264,211 | 69,266,146 | 69,357,164 | 69,368,701 |
nssv1503647 | Remapped | Perfect | NC_000004.12:g.(69 264211_69266146)_( 69357164_69368701) del | GRCh38.p12 | First Pass | NC_000004.12 | Chr4 | 69,264,211 | 69,266,146 | 69,357,164 | 69,368,701 |
nssv1503751 | Remapped | Perfect | NC_000004.12:g.(69 264211_69266146)_( 69357164_69368701) del | GRCh38.p12 | First Pass | NC_000004.12 | Chr4 | 69,264,211 | 69,266,146 | 69,357,164 | 69,368,701 |
nssv1505011 | Remapped | Perfect | NC_000004.12:g.(69 264211_69266146)_( 69357164_69368701) del | GRCh38.p12 | First Pass | NC_000004.12 | Chr4 | 69,264,211 | 69,266,146 | 69,357,164 | 69,368,701 |
nssv1505037 | Remapped | Perfect | NC_000004.12:g.(69 264211_69266146)_( 69357164_69368701) del | GRCh38.p12 | First Pass | NC_000004.12 | Chr4 | 69,264,211 | 69,266,146 | 69,357,164 | 69,368,701 |
nssv1506649 | Remapped | Perfect | NC_000004.12:g.(69 264211_69266146)_( 69357164_69368701) del | GRCh38.p12 | First Pass | NC_000004.12 | Chr4 | 69,264,211 | 69,266,146 | 69,357,164 | 69,368,701 |
nssv1506667 | Remapped | Perfect | NC_000004.12:g.(69 264211_69266146)_( 69357164_69368701) del | GRCh38.p12 | First Pass | NC_000004.12 | Chr4 | 69,264,211 | 69,266,146 | 69,357,164 | 69,368,701 |
nssv1506856 | Remapped | Perfect | NC_000004.12:g.(69 264211_69266146)_( 69357164_69368701) del | GRCh38.p12 | First Pass | NC_000004.12 | Chr4 | 69,264,211 | 69,266,146 | 69,357,164 | 69,368,701 |
nssv1513666 | Remapped | Perfect | NC_000004.12:g.(69 264211_69266146)_( 69357164_69368701) del | GRCh38.p12 | First Pass | NC_000004.12 | Chr4 | 69,264,211 | 69,266,146 | 69,357,164 | 69,368,701 |
nssv1515209 | Remapped | Perfect | NC_000004.12:g.(69 264211_69266146)_( 69357164_69368701) del | GRCh38.p12 | First Pass | NC_000004.12 | Chr4 | 69,264,211 | 69,266,146 | 69,357,164 | 69,368,701 |
nssv1517559 | Remapped | Perfect | NC_000004.12:g.(69 264211_69266146)_( 69357164_69368701) del | GRCh38.p12 | First Pass | NC_000004.12 | Chr4 | 69,264,211 | 69,266,146 | 69,357,164 | 69,368,701 |
nssv1518011 | Remapped | Perfect | NC_000004.12:g.(69 264211_69266146)_( 69357164_69368701) del | GRCh38.p12 | First Pass | NC_000004.12 | Chr4 | 69,264,211 | 69,266,146 | 69,357,164 | 69,368,701 |
nssv1518359 | Remapped | Perfect | NC_000004.12:g.(69 264211_69266146)_( 69357164_69368701) del | GRCh38.p12 | First Pass | NC_000004.12 | Chr4 | 69,264,211 | 69,266,146 | 69,357,164 | 69,368,701 |
nssv1499263 | Remapped | Perfect | NC_000004.11:g.(70 129929_70131864)_( 70222882_70234419) del | GRCh37.p13 | First Pass | NC_000004.11 | Chr4 | 70,129,929 | 70,131,864 | 70,222,882 | 70,234,419 |
nssv1499334 | Remapped | Perfect | NC_000004.11:g.(70 129929_70131864)_( 70222882_70234419) del | GRCh37.p13 | First Pass | NC_000004.11 | Chr4 | 70,129,929 | 70,131,864 | 70,222,882 | 70,234,419 |
nssv1502304 | Remapped | Perfect | NC_000004.11:g.(70 129929_70131864)_( 70222882_70234419) dup | GRCh37.p13 | First Pass | NC_000004.11 | Chr4 | 70,129,929 | 70,131,864 | 70,222,882 | 70,234,419 |
nssv1503253 | Remapped | Perfect | NC_000004.11:g.(70 129929_70131864)_( 70222882_70234419) del | GRCh37.p13 | First Pass | NC_000004.11 | Chr4 | 70,129,929 | 70,131,864 | 70,222,882 | 70,234,419 |
nssv1503627 | Remapped | Perfect | NC_000004.11:g.(70 129929_70131864)_( 70222882_70234419) del | GRCh37.p13 | First Pass | NC_000004.11 | Chr4 | 70,129,929 | 70,131,864 | 70,222,882 | 70,234,419 |
nssv1503647 | Remapped | Perfect | NC_000004.11:g.(70 129929_70131864)_( 70222882_70234419) del | GRCh37.p13 | First Pass | NC_000004.11 | Chr4 | 70,129,929 | 70,131,864 | 70,222,882 | 70,234,419 |
nssv1503751 | Remapped | Perfect | NC_000004.11:g.(70 129929_70131864)_( 70222882_70234419) del | GRCh37.p13 | First Pass | NC_000004.11 | Chr4 | 70,129,929 | 70,131,864 | 70,222,882 | 70,234,419 |
nssv1505011 | Remapped | Perfect | NC_000004.11:g.(70 129929_70131864)_( 70222882_70234419) del | GRCh37.p13 | First Pass | NC_000004.11 | Chr4 | 70,129,929 | 70,131,864 | 70,222,882 | 70,234,419 |
nssv1505037 | Remapped | Perfect | NC_000004.11:g.(70 129929_70131864)_( 70222882_70234419) del | GRCh37.p13 | First Pass | NC_000004.11 | Chr4 | 70,129,929 | 70,131,864 | 70,222,882 | 70,234,419 |
nssv1506649 | Remapped | Perfect | NC_000004.11:g.(70 129929_70131864)_( 70222882_70234419) del | GRCh37.p13 | First Pass | NC_000004.11 | Chr4 | 70,129,929 | 70,131,864 | 70,222,882 | 70,234,419 |
nssv1506667 | Remapped | Perfect | NC_000004.11:g.(70 129929_70131864)_( 70222882_70234419) del | GRCh37.p13 | First Pass | NC_000004.11 | Chr4 | 70,129,929 | 70,131,864 | 70,222,882 | 70,234,419 |
nssv1506856 | Remapped | Perfect | NC_000004.11:g.(70 129929_70131864)_( 70222882_70234419) del | GRCh37.p13 | First Pass | NC_000004.11 | Chr4 | 70,129,929 | 70,131,864 | 70,222,882 | 70,234,419 |
nssv1513666 | Remapped | Perfect | NC_000004.11:g.(70 129929_70131864)_( 70222882_70234419) del | GRCh37.p13 | First Pass | NC_000004.11 | Chr4 | 70,129,929 | 70,131,864 | 70,222,882 | 70,234,419 |
nssv1515209 | Remapped | Perfect | NC_000004.11:g.(70 129929_70131864)_( 70222882_70234419) del | GRCh37.p13 | First Pass | NC_000004.11 | Chr4 | 70,129,929 | 70,131,864 | 70,222,882 | 70,234,419 |
nssv1517559 | Remapped | Perfect | NC_000004.11:g.(70 129929_70131864)_( 70222882_70234419) del | GRCh37.p13 | First Pass | NC_000004.11 | Chr4 | 70,129,929 | 70,131,864 | 70,222,882 | 70,234,419 |
nssv1518011 | Remapped | Perfect | NC_000004.11:g.(70 129929_70131864)_( 70222882_70234419) del | GRCh37.p13 | First Pass | NC_000004.11 | Chr4 | 70,129,929 | 70,131,864 | 70,222,882 | 70,234,419 |
nssv1518359 | Remapped | Perfect | NC_000004.11:g.(70 129929_70131864)_( 70222882_70234419) del | GRCh37.p13 | First Pass | NC_000004.11 | Chr4 | 70,129,929 | 70,131,864 | 70,222,882 | 70,234,419 |
nssv1499263 | Submitted genomic | NC_000004.10:g.(70 164518_70166453)_( 70257471_70269008) del | NCBI36 (hg18) | NC_000004.10 | Chr4 | 70,164,518 | 70,166,453 | 70,257,471 | 70,269,008 | ||
nssv1499334 | Submitted genomic | NC_000004.10:g.(70 164518_70166453)_( 70257471_70269008) del | NCBI36 (hg18) | NC_000004.10 | Chr4 | 70,164,518 | 70,166,453 | 70,257,471 | 70,269,008 | ||
nssv1502304 | Submitted genomic | NC_000004.10:g.(70 164518_70166453)_( 70257471_70269008) dup | NCBI36 (hg18) | NC_000004.10 | Chr4 | 70,164,518 | 70,166,453 | 70,257,471 | 70,269,008 | ||
nssv1503253 | Submitted genomic | NC_000004.10:g.(70 164518_70166453)_( 70257471_70269008) del | NCBI36 (hg18) | NC_000004.10 | Chr4 | 70,164,518 | 70,166,453 | 70,257,471 | 70,269,008 | ||
nssv1503627 | Submitted genomic | NC_000004.10:g.(70 164518_70166453)_( 70257471_70269008) del | NCBI36 (hg18) | NC_000004.10 | Chr4 | 70,164,518 | 70,166,453 | 70,257,471 | 70,269,008 | ||
nssv1503647 | Submitted genomic | NC_000004.10:g.(70 164518_70166453)_( 70257471_70269008) del | NCBI36 (hg18) | NC_000004.10 | Chr4 | 70,164,518 | 70,166,453 | 70,257,471 | 70,269,008 | ||
nssv1503751 | Submitted genomic | NC_000004.10:g.(70 164518_70166453)_( 70257471_70269008) del | NCBI36 (hg18) | NC_000004.10 | Chr4 | 70,164,518 | 70,166,453 | 70,257,471 | 70,269,008 | ||
nssv1505011 | Submitted genomic | NC_000004.10:g.(70 164518_70166453)_( 70257471_70269008) del | NCBI36 (hg18) | NC_000004.10 | Chr4 | 70,164,518 | 70,166,453 | 70,257,471 | 70,269,008 | ||
nssv1505037 | Submitted genomic | NC_000004.10:g.(70 164518_70166453)_( 70257471_70269008) del | NCBI36 (hg18) | NC_000004.10 | Chr4 | 70,164,518 | 70,166,453 | 70,257,471 | 70,269,008 | ||
nssv1506649 | Submitted genomic | NC_000004.10:g.(70 164518_70166453)_( 70257471_70269008) del | NCBI36 (hg18) | NC_000004.10 | Chr4 | 70,164,518 | 70,166,453 | 70,257,471 | 70,269,008 | ||
nssv1506667 | Submitted genomic | NC_000004.10:g.(70 164518_70166453)_( 70257471_70269008) del | NCBI36 (hg18) | NC_000004.10 | Chr4 | 70,164,518 | 70,166,453 | 70,257,471 | 70,269,008 | ||
nssv1506856 | Submitted genomic | NC_000004.10:g.(70 164518_70166453)_( 70257471_70269008) del | NCBI36 (hg18) | NC_000004.10 | Chr4 | 70,164,518 | 70,166,453 | 70,257,471 | 70,269,008 | ||
nssv1513666 | Submitted genomic | NC_000004.10:g.(70 164518_70166453)_( 70257471_70269008) del | NCBI36 (hg18) | NC_000004.10 | Chr4 | 70,164,518 | 70,166,453 | 70,257,471 | 70,269,008 | ||
nssv1515209 | Submitted genomic | NC_000004.10:g.(70 164518_70166453)_( 70257471_70269008) del | NCBI36 (hg18) | NC_000004.10 | Chr4 | 70,164,518 | 70,166,453 | 70,257,471 | 70,269,008 | ||
nssv1517559 | Submitted genomic | NC_000004.10:g.(70 164518_70166453)_( 70257471_70269008) del | NCBI36 (hg18) | NC_000004.10 | Chr4 | 70,164,518 | 70,166,453 | 70,257,471 | 70,269,008 | ||
nssv1518011 | Submitted genomic | NC_000004.10:g.(70 164518_70166453)_( 70257471_70269008) del | NCBI36 (hg18) | NC_000004.10 | Chr4 | 70,164,518 | 70,166,453 | 70,257,471 | 70,269,008 | ||
nssv1518359 | Submitted genomic | NC_000004.10:g.(70 164518_70166453)_( 70257471_70269008) del | NCBI36 (hg18) | NC_000004.10 | Chr4 | 70,164,518 | 70,166,453 | 70,257,471 | 70,269,008 |