nsv879550

Organism: Homo sapiens

Study:nstd71 (Xu et al. 2011)
Variant Type:copy number variation
Method Type:SNP array
Submitted on:NCBI36 (hg18)

Variant Calls:7
Validation:Not tested
Clinical Assertions: No
Region Size:37,860

Publication(s):Xu et al. 2011

Links to Other Resources

Overlapping Genes

Source: NCBI

Genome View
Variant Region Details and Evidence
Validation Information
Clinical Assertions
Genotype Information

Genome View

Select assembly:

Overlapping variant regions from other studies: 342 SVs from 68 studies. See in: genome view

Remapped(Score: Perfect):90,647,379-90,685,238

Variant Region Placement Information

Variant Region ID	Placement Type	Score	Assembly	Assembly Unit	Reciprocity	Sequence ID	Chr	Outer Start	Inner Start	Inner Stop	Outer Stop
nsv879550	Remapped	Perfect	GRCh38.p12	Primary Assembly	First Pass	NC_000004.12	Chr4	90,647,379	90,653,225	90,683,415	90,685,238
nsv879550	Remapped	Perfect	GRCh37.p13	Primary Assembly	First Pass	NC_000004.11	Chr4	91,568,530	91,574,376	91,604,566	91,606,389
nsv879550	Submitted genomic		NCBI36 (hg18)	Primary Assembly		NC_000004.10	Chr4	91,787,553	91,793,399	91,823,589	91,825,412

Variant Call Information

Variant Call ID	Type	Sample ID	Method	Analysis	Other Calls in this Sample and Study
nssv1532141	copy number loss	MS10727	SNP array	SNP genotyping analysis	29
nssv1532656	copy number loss	MS10802	SNP array	SNP genotyping analysis	73
nssv1536513	copy number loss	MS12827	SNP array	SNP genotyping analysis	60
nssv1555264	copy number loss	MS21252	SNP array	SNP genotyping analysis	35
nssv1558469	copy number loss	MS23290	SNP array	SNP genotyping analysis	41
nssv1562814	copy number loss	MS25751	SNP array	SNP genotyping analysis	42
nssv1597438	copy number loss	IS41043	SNP array	SNP genotyping analysis	96

Variant Call Placement Information

Variant Call ID	Placement Type	Score	HGVS	Assembly	Reciprocity	Sequence ID	Chr	Outer Start	Inner Start	Inner Stop	Outer Stop
nssv1532141	Remapped	Perfect	NC_000004.12:g.(90 647379_90653225)_( 90683415_90685238) del	GRCh38.p12	First Pass	NC_000004.12	Chr4	90,647,379	90,653,225	90,683,415	90,685,238
nssv1532656	Remapped	Perfect	NC_000004.12:g.(90 647379_90653225)_( 90683415_90685238) del	GRCh38.p12	First Pass	NC_000004.12	Chr4	90,647,379	90,653,225	90,683,415	90,685,238
nssv1536513	Remapped	Perfect	NC_000004.12:g.(90 647379_90653225)_( 90683415_90685238) del	GRCh38.p12	First Pass	NC_000004.12	Chr4	90,647,379	90,653,225	90,683,415	90,685,238
nssv1555264	Remapped	Perfect	NC_000004.12:g.(90 647379_90653225)_( 90683415_90685238) del	GRCh38.p12	First Pass	NC_000004.12	Chr4	90,647,379	90,653,225	90,683,415	90,685,238
nssv1558469	Remapped	Perfect	NC_000004.12:g.(90 647379_90653225)_( 90683415_90685238) del	GRCh38.p12	First Pass	NC_000004.12	Chr4	90,647,379	90,653,225	90,683,415	90,685,238
nssv1562814	Remapped	Perfect	NC_000004.12:g.(90 647379_90653225)_( 90683415_90685238) del	GRCh38.p12	First Pass	NC_000004.12	Chr4	90,647,379	90,653,225	90,683,415	90,685,238
nssv1597438	Remapped	Perfect	NC_000004.12:g.(90 647379_90653225)_( 90683415_90685238) del	GRCh38.p12	First Pass	NC_000004.12	Chr4	90,647,379	90,653,225	90,683,415	90,685,238
nssv1532141	Remapped	Perfect	NC_000004.11:g.(91 568530_91574376)_( 91604566_91606389) del	GRCh37.p13	First Pass	NC_000004.11	Chr4	91,568,530	91,574,376	91,604,566	91,606,389
nssv1532656	Remapped	Perfect	NC_000004.11:g.(91 568530_91574376)_( 91604566_91606389) del	GRCh37.p13	First Pass	NC_000004.11	Chr4	91,568,530	91,574,376	91,604,566	91,606,389
nssv1536513	Remapped	Perfect	NC_000004.11:g.(91 568530_91574376)_( 91604566_91606389) del	GRCh37.p13	First Pass	NC_000004.11	Chr4	91,568,530	91,574,376	91,604,566	91,606,389
nssv1555264	Remapped	Perfect	NC_000004.11:g.(91 568530_91574376)_( 91604566_91606389) del	GRCh37.p13	First Pass	NC_000004.11	Chr4	91,568,530	91,574,376	91,604,566	91,606,389
nssv1558469	Remapped	Perfect	NC_000004.11:g.(91 568530_91574376)_( 91604566_91606389) del	GRCh37.p13	First Pass	NC_000004.11	Chr4	91,568,530	91,574,376	91,604,566	91,606,389
nssv1562814	Remapped	Perfect	NC_000004.11:g.(91 568530_91574376)_( 91604566_91606389) del	GRCh37.p13	First Pass	NC_000004.11	Chr4	91,568,530	91,574,376	91,604,566	91,606,389
nssv1597438	Remapped	Perfect	NC_000004.11:g.(91 568530_91574376)_( 91604566_91606389) del	GRCh37.p13	First Pass	NC_000004.11	Chr4	91,568,530	91,574,376	91,604,566	91,606,389
nssv1532141	Submitted genomic		NC_000004.10:g.(91 787553_91793399)_( 91823589_91825412) del	NCBI36 (hg18)		NC_000004.10	Chr4	91,787,553	91,793,399	91,823,589	91,825,412
nssv1532656	Submitted genomic		NC_000004.10:g.(91 787553_91793399)_( 91823589_91825412) del	NCBI36 (hg18)		NC_000004.10	Chr4	91,787,553	91,793,399	91,823,589	91,825,412
nssv1536513	Submitted genomic		NC_000004.10:g.(91 787553_91793399)_( 91823589_91825412) del	NCBI36 (hg18)		NC_000004.10	Chr4	91,787,553	91,793,399	91,823,589	91,825,412
nssv1555264	Submitted genomic		NC_000004.10:g.(91 787553_91793399)_( 91823589_91825412) del	NCBI36 (hg18)		NC_000004.10	Chr4	91,787,553	91,793,399	91,823,589	91,825,412
nssv1558469	Submitted genomic		NC_000004.10:g.(91 787553_91793399)_( 91823589_91825412) del	NCBI36 (hg18)		NC_000004.10	Chr4	91,787,553	91,793,399	91,823,589	91,825,412
nssv1562814	Submitted genomic		NC_000004.10:g.(91 787553_91793399)_( 91823589_91825412) del	NCBI36 (hg18)		NC_000004.10	Chr4	91,787,553	91,793,399	91,823,589	91,825,412
nssv1597438	Submitted genomic		NC_000004.10:g.(91 787553_91793399)_( 91823589_91825412) del	NCBI36 (hg18)		NC_000004.10	Chr4	91,787,553	91,793,399	91,823,589	91,825,412

dbVar

Database of genomic structural variation

nsv879550

Links to Other Resources

Genome View

Variant Region Placement Information

Variant Call Information

Variant Call Placement Information

No validation data were submitted for this variant

No clinical assertion data were submitted for this variant

No genotype data were submitted for this variant