nsv879623
- Organism: Homo sapiens
- Study:nstd71 (Xu et al. 2011)
- Variant Type:copy number variation
- Method Type:SNP array
- Submitted on:NCBI36 (hg18)
- Variant Calls:1
- Validation:Not tested
- Clinical Assertions: No
- Region Size:45,254
- Publication(s):Xu et al. 2011
Source: NCBI
- Genome View
- Variant Region Details and Evidence
- Validation Information
- Clinical Assertions
- Genotype Information
Genome View
Select assembly:Overlapping variant regions from other studies: 211 SVs from 39 studies. See in: genome view
Overlapping variant regions from other studies: 211 SVs from 39 studies. See in: genome view
Overlapping variant regions from other studies: 62 SVs from 15 studies. See in: genome view
Variant Region Placement Information
| Variant Region ID | Placement Type | Score | Assembly | Assembly Unit | Reciprocity | Sequence ID | Chr | Outer Start | Inner Start | Inner Stop | Outer Stop |
|---|---|---|---|---|---|---|---|---|---|---|---|
| nsv879623 | Remapped | Perfect | GRCh38.p12 | Primary Assembly | First Pass | NC_000004.12 | Chr4 | 95,202,315 | 95,205,817 | 95,242,093 | 95,247,568 |
| nsv879623 | Remapped | Perfect | GRCh37.p13 | Primary Assembly | First Pass | NC_000004.11 | Chr4 | 96,123,466 | 96,126,968 | 96,163,244 | 96,168,719 |
| nsv879623 | Submitted genomic | NCBI36 (hg18) | Primary Assembly | NC_000004.10 | Chr4 | 96,342,489 | 96,345,991 | 96,382,267 | 96,387,742 |
Variant Call Information
| Variant Call ID | Type | Sample ID | Method | Analysis | Other Calls in this Sample and Study |
|---|---|---|---|---|---|
| nssv1534560 | copy number loss | MS11669 | SNP array | SNP genotyping analysis | 42 |
Variant Call Placement Information
| Variant Call ID | Placement Type | Score | HGVS | Assembly | Reciprocity | Sequence ID | Chr | Outer Start | Inner Start | Inner Stop | Outer Stop |
|---|---|---|---|---|---|---|---|---|---|---|---|
| nssv1534560 | Remapped | Perfect | NC_000004.12:g.(95 202315_95205817)_( 95242093_95247568) del | GRCh38.p12 | First Pass | NC_000004.12 | Chr4 | 95,202,315 | 95,205,817 | 95,242,093 | 95,247,568 |
| nssv1534560 | Remapped | Perfect | NC_000004.11:g.(96 123466_96126968)_( 96163244_96168719) del | GRCh37.p13 | First Pass | NC_000004.11 | Chr4 | 96,123,466 | 96,126,968 | 96,163,244 | 96,168,719 |
| nssv1534560 | Submitted genomic | NC_000004.10:g.(96 342489_96345991)_( 96382267_96387742) del | NCBI36 (hg18) | NC_000004.10 | Chr4 | 96,342,489 | 96,345,991 | 96,382,267 | 96,387,742 |