nsv879780
- Organism: Homo sapiens
- Study:nstd71 (Xu et al. 2011)
- Variant Type:copy number variation
- Method Type:SNP array
- Submitted on:NCBI36 (hg18)
- Variant Calls:1
- Validation:Not tested
- Clinical Assertions: No
- Region Size:122,020
- Publication(s):Xu et al. 2011
Source: NCBI
- Genome View
- Variant Region Details and Evidence
- Validation Information
- Clinical Assertions
- Genotype Information
Genome View
Select assembly:Overlapping variant regions from other studies: 460 SVs from 58 studies. See in: genome view
Overlapping variant regions from other studies: 460 SVs from 58 studies. See in: genome view
Overlapping variant regions from other studies: 149 SVs from 16 studies. See in: genome view
Variant Region Placement Information
| Variant Region ID | Placement Type | Score | Assembly | Assembly Unit | Reciprocity | Sequence ID | Chr | Outer Start | Inner Start | Inner Stop | Outer Stop |
|---|---|---|---|---|---|---|---|---|---|---|---|
| nsv879780 | Remapped | Perfect | GRCh38.p12 | Primary Assembly | First Pass | NC_000004.12 | Chr4 | 115,431,485 | 115,445,034 | 115,543,683 | 115,553,504 |
| nsv879780 | Remapped | Perfect | GRCh37.p13 | Primary Assembly | First Pass | NC_000004.11 | Chr4 | 116,352,641 | 116,366,190 | 116,464,839 | 116,474,660 |
| nsv879780 | Submitted genomic | NCBI36 (hg18) | Primary Assembly | NC_000004.10 | Chr4 | 116,572,090 | 116,585,639 | 116,684,288 | 116,694,109 |
Variant Call Information
| Variant Call ID | Type | Sample ID | Method | Analysis | Other Calls in this Sample and Study |
|---|---|---|---|---|---|
| nssv1566029 | copy number loss | IS30562 | SNP array | SNP genotyping analysis | 16 |
Variant Call Placement Information
| Variant Call ID | Placement Type | Score | HGVS | Assembly | Reciprocity | Sequence ID | Chr | Outer Start | Inner Start | Inner Stop | Outer Stop |
|---|---|---|---|---|---|---|---|---|---|---|---|
| nssv1566029 | Remapped | Perfect | NC_000004.12:g.(11 5431485_115445034) _(115543683_115553 504)del | GRCh38.p12 | First Pass | NC_000004.12 | Chr4 | 115,431,485 | 115,445,034 | 115,543,683 | 115,553,504 |
| nssv1566029 | Remapped | Perfect | NC_000004.11:g.(11 6352641_116366190) _(116464839_116474 660)del | GRCh37.p13 | First Pass | NC_000004.11 | Chr4 | 116,352,641 | 116,366,190 | 116,464,839 | 116,474,660 |
| nssv1566029 | Submitted genomic | NC_000004.10:g.(11 6572090_116585639) _(116684288_116694 109)del | NCBI36 (hg18) | NC_000004.10 | Chr4 | 116,572,090 | 116,585,639 | 116,684,288 | 116,694,109 |