nsv879811
- Organism: Homo sapiens
- Study:nstd71 (Xu et al. 2011)
- Variant Type:copy number variation
- Method Type:SNP array
- Submitted on:NCBI36 (hg18)
- Variant Calls:1
- Validation:Not tested
- Clinical Assertions: No
- Region Size:79,884
- Publication(s):Xu et al. 2011
Source: NCBI
- Genome View
- Variant Region Details and Evidence
- Validation Information
- Clinical Assertions
- Genotype Information
Genome View
Select assembly:Overlapping variant regions from other studies: 378 SVs from 49 studies. See in: genome view
Overlapping variant regions from other studies: 378 SVs from 49 studies. See in: genome view
Overlapping variant regions from other studies: 130 SVs from 16 studies. See in: genome view
Variant Region Placement Information
| Variant Region ID | Placement Type | Score | Assembly | Assembly Unit | Reciprocity | Sequence ID | Chr | Outer Start | Inner Start | Inner Stop | Outer Stop |
|---|---|---|---|---|---|---|---|---|---|---|---|
| nsv879811 | Remapped | Perfect | GRCh38.p12 | Primary Assembly | First Pass | NC_000004.12 | Chr4 | 116,911,356 | 116,914,864 | 116,976,544 | 116,991,239 |
| nsv879811 | Remapped | Perfect | GRCh37.p13 | Primary Assembly | First Pass | NC_000004.11 | Chr4 | 117,832,512 | 117,836,020 | 117,897,700 | 117,912,395 |
| nsv879811 | Submitted genomic | NCBI36 (hg18) | Primary Assembly | NC_000004.10 | Chr4 | 118,051,960 | 118,055,468 | 118,117,148 | 118,131,843 |
Variant Call Information
| Variant Call ID | Type | Sample ID | Method | Analysis | Other Calls in this Sample and Study |
|---|---|---|---|---|---|
| nssv1523254 | copy number loss | SP53838 | SNP array | SNP genotyping analysis | 10 |
Variant Call Placement Information
| Variant Call ID | Placement Type | Score | HGVS | Assembly | Reciprocity | Sequence ID | Chr | Outer Start | Inner Start | Inner Stop | Outer Stop |
|---|---|---|---|---|---|---|---|---|---|---|---|
| nssv1523254 | Remapped | Perfect | NC_000004.12:g.(11 6911356_116914864) _(116976544_116991 239)del | GRCh38.p12 | First Pass | NC_000004.12 | Chr4 | 116,911,356 | 116,914,864 | 116,976,544 | 116,991,239 |
| nssv1523254 | Remapped | Perfect | NC_000004.11:g.(11 7832512_117836020) _(117897700_117912 395)del | GRCh37.p13 | First Pass | NC_000004.11 | Chr4 | 117,832,512 | 117,836,020 | 117,897,700 | 117,912,395 |
| nssv1523254 | Submitted genomic | NC_000004.10:g.(11 8051960_118055468) _(118117148_118131 843)del | NCBI36 (hg18) | NC_000004.10 | Chr4 | 118,051,960 | 118,055,468 | 118,117,148 | 118,131,843 |