Warning: The NCBI web site requires JavaScript to function. more...

dbVar

Database of genomic structural variation

nsv880018

Organism: Homo sapiens

Study:nstd71 (Xu et al. 2011)
Variant Type:copy number variation
Method Type:SNP array
Submitted on:NCBI36 (hg18)

Variant Calls:2
Validation:Not tested
Clinical Assertions: No
Region Size:102,017

Publication(s):Xu et al. 2011

Links to Other Resources

Overlapping Genes

Source: NCBI

Genome View
Variant Region Details and Evidence
Validation Information
Clinical Assertions
Genotype Information

Genome View

Select assembly:

Overlapping variant regions from other studies: 621 SVs from 66 studies. See in: genome view

Remapped(Score: Perfect):132,255,742-132,357,758

Variant Region Placement Information

Variant Region ID	Placement Type	Score	Assembly	Assembly Unit	Reciprocity	Sequence ID	Chr	Outer Start	Inner Start	Inner Stop	Outer Stop
nsv880018	Remapped	Perfect	GRCh38.p12	Primary Assembly	First Pass	NC_000004.12	Chr4	132,255,742	132,262,389	132,348,901	132,357,758
nsv880018	Remapped	Perfect	GRCh37.p13	Primary Assembly	First Pass	NC_000004.11	Chr4	133,176,897	133,183,544	133,270,056	133,278,913
nsv880018	Submitted genomic		NCBI36 (hg18)	Primary Assembly		NC_000004.10	Chr4	133,396,347	133,402,994	133,489,506	133,498,363

Variant Call Information

Variant Call ID	Type	Sample ID	Method	Analysis	Other Calls in this Sample and Study
nssv1569573	copy number loss	IS31634	SNP array	SNP genotyping analysis	29
nssv1571239	copy number gain	IS32653	SNP array	SNP genotyping analysis	20

Variant Call Placement Information

Variant Call ID	Placement Type	Score	HGVS	Assembly	Reciprocity	Sequence ID	Chr	Outer Start	Inner Start	Inner Stop	Outer Stop
nssv1569573	Remapped	Perfect	NC_000004.12:g.(13 2255742_132262389) _(132348901_132357 758)del	GRCh38.p12	First Pass	NC_000004.12	Chr4	132,255,742	132,262,389	132,348,901	132,357,758
nssv1571239	Remapped	Perfect	NC_000004.12:g.(13 2255742_132262389) _(132348901_132357 758)dup	GRCh38.p12	First Pass	NC_000004.12	Chr4	132,255,742	132,262,389	132,348,901	132,357,758
nssv1569573	Remapped	Perfect	NC_000004.11:g.(13 3176897_133183544) _(133270056_133278 913)del	GRCh37.p13	First Pass	NC_000004.11	Chr4	133,176,897	133,183,544	133,270,056	133,278,913
nssv1571239	Remapped	Perfect	NC_000004.11:g.(13 3176897_133183544) _(133270056_133278 913)dup	GRCh37.p13	First Pass	NC_000004.11	Chr4	133,176,897	133,183,544	133,270,056	133,278,913
nssv1569573	Submitted genomic		NC_000004.10:g.(13 3396347_133402994) _(133489506_133498 363)del	NCBI36 (hg18)		NC_000004.10	Chr4	133,396,347	133,402,994	133,489,506	133,498,363
nssv1571239	Submitted genomic		NC_000004.10:g.(13 3396347_133402994) _(133489506_133498 363)dup	NCBI36 (hg18)		NC_000004.10	Chr4	133,396,347	133,402,994	133,489,506	133,498,363

No validation data were submitted for this variant

No clinical assertion data were submitted for this variant

No genotype data were submitted for this variant

You are here: NCBI