nsv880061
- Organism: Homo sapiens
- Study:nstd71 (Xu et al. 2011)
- Variant Type:copy number variation
- Method Type:SNP array
- Submitted on:NCBI36 (hg18)
- Variant Calls:1
- Validation:Not tested
- Clinical Assertions: No
- Region Size:169,375
- Publication(s):Xu et al. 2011
Source: NCBI
- Genome View
- Variant Region Details and Evidence
- Validation Information
- Clinical Assertions
- Genotype Information
Genome View
Select assembly:Overlapping variant regions from other studies: 495 SVs from 63 studies. See in: genome view
Overlapping variant regions from other studies: 495 SVs from 63 studies. See in: genome view
Overlapping variant regions from other studies: 122 SVs from 20 studies. See in: genome view
Variant Region Placement Information
| Variant Region ID | Placement Type | Score | Assembly | Assembly Unit | Reciprocity | Sequence ID | Chr | Outer Start | Inner Start | Inner Stop | Outer Stop |
|---|---|---|---|---|---|---|---|---|---|---|---|
| nsv880061 | Remapped | Perfect | GRCh38.p12 | Primary Assembly | First Pass | NC_000004.12 | Chr4 | 133,797,546 | 133,808,314 | 133,956,092 | 133,966,920 |
| nsv880061 | Remapped | Perfect | GRCh37.p13 | Primary Assembly | First Pass | NC_000004.11 | Chr4 | 134,718,701 | 134,729,469 | 134,877,247 | 134,888,075 |
| nsv880061 | Submitted genomic | NCBI36 (hg18) | Primary Assembly | NC_000004.10 | Chr4 | 134,938,151 | 134,948,919 | 135,096,697 | 135,107,525 |
Variant Call Information
| Variant Call ID | Type | Sample ID | Method | Analysis | Other Calls in this Sample and Study |
|---|---|---|---|---|---|
| nssv1595496 | copy number gain | IS40239 | SNP array | SNP genotyping analysis | 10 |
Variant Call Placement Information
| Variant Call ID | Placement Type | Score | HGVS | Assembly | Reciprocity | Sequence ID | Chr | Outer Start | Inner Start | Inner Stop | Outer Stop |
|---|---|---|---|---|---|---|---|---|---|---|---|
| nssv1595496 | Remapped | Perfect | NC_000004.12:g.(13 3797546_133808314) _(133956092_133966 920)dup | GRCh38.p12 | First Pass | NC_000004.12 | Chr4 | 133,797,546 | 133,808,314 | 133,956,092 | 133,966,920 |
| nssv1595496 | Remapped | Perfect | NC_000004.11:g.(13 4718701_134729469) _(134877247_134888 075)dup | GRCh37.p13 | First Pass | NC_000004.11 | Chr4 | 134,718,701 | 134,729,469 | 134,877,247 | 134,888,075 |
| nssv1595496 | Submitted genomic | NC_000004.10:g.(13 4938151_134948919) _(135096697_135107 525)dup | NCBI36 (hg18) | NC_000004.10 | Chr4 | 134,938,151 | 134,948,919 | 135,096,697 | 135,107,525 |