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dbVar

Database of genomic structural variation

nsv880094

Organism: Homo sapiens

Study:nstd71 (Xu et al. 2011)
Variant Type:copy number variation
Method Type:SNP array
Submitted on:NCBI36 (hg18)

Variant Calls:3
Validation:Not tested
Clinical Assertions: No
Region Size:144,099

Publication(s):Xu et al. 2011

Links to Other Resources

Overlapping Genes

Source: NCBI

Genome View
Variant Region Details and Evidence
Validation Information
Clinical Assertions
Genotype Information

Genome View

Select assembly:

Overlapping variant regions from other studies: 675 SVs from 67 studies. See in: genome view

Remapped(Score: Perfect):134,567,613-134,711,711

Variant Region Placement Information

Variant Region ID	Placement Type	Score	Assembly	Assembly Unit	Reciprocity	Sequence ID	Chr	Outer Start	Inner Start	Inner Stop	Outer Stop
nsv880094	Remapped	Perfect	GRCh38.p12	Primary Assembly	First Pass	NC_000004.12	Chr4	134,567,613	134,576,034	134,702,636	134,711,711
nsv880094	Remapped	Perfect	GRCh37.p13	Primary Assembly	First Pass	NC_000004.11	Chr4	135,488,768	135,497,189	135,623,791	135,632,866
nsv880094	Submitted genomic		NCBI36 (hg18)	Primary Assembly		NC_000004.10	Chr4	135,708,218	135,716,639	135,843,241	135,852,316

Variant Call Information

Variant Call ID	Type	Sample ID	Method	Analysis	Other Calls in this Sample and Study
nssv1541420	copy number loss	MS15312	SNP array	SNP genotyping analysis	67
nssv1587243	copy number loss	IS37999	SNP array	SNP genotyping analysis	47
nssv1588729	copy number loss	IS38239	SNP array	SNP genotyping analysis	28

Variant Call Placement Information

Variant Call ID	Placement Type	Score	HGVS	Assembly	Reciprocity	Sequence ID	Chr	Outer Start	Inner Start	Inner Stop	Outer Stop
nssv1541420	Remapped	Perfect	NC_000004.12:g.(13 4567613_134576034) _(134702636_134711 711)del	GRCh38.p12	First Pass	NC_000004.12	Chr4	134,567,613	134,576,034	134,702,636	134,711,711
nssv1587243	Remapped	Perfect	NC_000004.12:g.(13 4567613_134576034) _(134702636_134711 711)del	GRCh38.p12	First Pass	NC_000004.12	Chr4	134,567,613	134,576,034	134,702,636	134,711,711
nssv1588729	Remapped	Perfect	NC_000004.12:g.(13 4567613_134576034) _(134702636_134711 711)del	GRCh38.p12	First Pass	NC_000004.12	Chr4	134,567,613	134,576,034	134,702,636	134,711,711
nssv1541420	Remapped	Perfect	NC_000004.11:g.(13 5488768_135497189) _(135623791_135632 866)del	GRCh37.p13	First Pass	NC_000004.11	Chr4	135,488,768	135,497,189	135,623,791	135,632,866
nssv1587243	Remapped	Perfect	NC_000004.11:g.(13 5488768_135497189) _(135623791_135632 866)del	GRCh37.p13	First Pass	NC_000004.11	Chr4	135,488,768	135,497,189	135,623,791	135,632,866
nssv1588729	Remapped	Perfect	NC_000004.11:g.(13 5488768_135497189) _(135623791_135632 866)del	GRCh37.p13	First Pass	NC_000004.11	Chr4	135,488,768	135,497,189	135,623,791	135,632,866
nssv1541420	Submitted genomic		NC_000004.10:g.(13 5708218_135716639) _(135843241_135852 316)del	NCBI36 (hg18)		NC_000004.10	Chr4	135,708,218	135,716,639	135,843,241	135,852,316
nssv1587243	Submitted genomic		NC_000004.10:g.(13 5708218_135716639) _(135843241_135852 316)del	NCBI36 (hg18)		NC_000004.10	Chr4	135,708,218	135,716,639	135,843,241	135,852,316
nssv1588729	Submitted genomic		NC_000004.10:g.(13 5708218_135716639) _(135843241_135852 316)del	NCBI36 (hg18)		NC_000004.10	Chr4	135,708,218	135,716,639	135,843,241	135,852,316

No validation data were submitted for this variant

No clinical assertion data were submitted for this variant

No genotype data were submitted for this variant

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