nsv880162
- Organism: Homo sapiens
- Study:nstd71 (Xu et al. 2011)
- Variant Type:copy number variation
- Method Type:SNP array
- Submitted on:NCBI36 (hg18)
- Variant Calls:1
- Validation:Not tested
- Clinical Assertions: No
- Region Size:59,661
- Publication(s):Xu et al. 2011
Source: NCBI
- Genome View
- Variant Region Details and Evidence
- Validation Information
- Clinical Assertions
- Genotype Information
Genome View
Select assembly:Overlapping variant regions from other studies: 281 SVs from 42 studies. See in: genome view
Overlapping variant regions from other studies: 281 SVs from 42 studies. See in: genome view
Overlapping variant regions from other studies: 70 SVs from 13 studies. See in: genome view
Variant Region Placement Information
| Variant Region ID | Placement Type | Score | Assembly | Assembly Unit | Reciprocity | Sequence ID | Chr | Outer Start | Inner Start | Inner Stop | Outer Stop |
|---|---|---|---|---|---|---|---|---|---|---|---|
| nsv880162 | Remapped | Perfect | GRCh38.p12 | Primary Assembly | First Pass | NC_000004.12 | Chr4 | 139,631,245 | 139,642,068 | 139,688,171 | 139,690,905 |
| nsv880162 | Remapped | Perfect | GRCh37.p13 | Primary Assembly | First Pass | NC_000004.11 | Chr4 | 140,552,399 | 140,563,222 | 140,609,325 | 140,612,059 |
| nsv880162 | Submitted genomic | NCBI36 (hg18) | Primary Assembly | NC_000004.10 | Chr4 | 140,771,849 | 140,782,672 | 140,828,775 | 140,831,509 |
Variant Call Information
| Variant Call ID | Type | Sample ID | Method | Analysis | Other Calls in this Sample and Study |
|---|---|---|---|---|---|
| nssv1557936 | copy number loss | MS22998 | SNP array | SNP genotyping analysis | 17 |
Variant Call Placement Information
| Variant Call ID | Placement Type | Score | HGVS | Assembly | Reciprocity | Sequence ID | Chr | Outer Start | Inner Start | Inner Stop | Outer Stop |
|---|---|---|---|---|---|---|---|---|---|---|---|
| nssv1557936 | Remapped | Perfect | NC_000004.12:g.(13 9631245_139642068) _(139688171_139690 905)del | GRCh38.p12 | First Pass | NC_000004.12 | Chr4 | 139,631,245 | 139,642,068 | 139,688,171 | 139,690,905 |
| nssv1557936 | Remapped | Perfect | NC_000004.11:g.(14 0552399_140563222) _(140609325_140612 059)del | GRCh37.p13 | First Pass | NC_000004.11 | Chr4 | 140,552,399 | 140,563,222 | 140,609,325 | 140,612,059 |
| nssv1557936 | Submitted genomic | NC_000004.10:g.(14 0771849_140782672) _(140828775_140831 509)del | NCBI36 (hg18) | NC_000004.10 | Chr4 | 140,771,849 | 140,782,672 | 140,828,775 | 140,831,509 |