nsv880605
- Organism: Homo sapiens
- Study:nstd71 (Xu et al. 2011)
- Variant Type:copy number variation
- Method Type:SNP array
- Submitted on:NCBI36 (hg18)
- Variant Calls:1
- Validation:Not tested
- Clinical Assertions: No
- Region Size:180,233
- Publication(s):Xu et al. 2011
Source: NCBI
- Genome View
- Variant Region Details and Evidence
- Validation Information
- Clinical Assertions
- Genotype Information
Genome View
Select assembly:Overlapping variant regions from other studies: 766 SVs from 69 studies. See in: genome view
Overlapping variant regions from other studies: 768 SVs from 69 studies. See in: genome view
Overlapping variant regions from other studies: 244 SVs from 19 studies. See in: genome view
Variant Region Placement Information
| Variant Region ID | Placement Type | Score | Assembly | Assembly Unit | Reciprocity | Sequence ID | Chr | Outer Start | Inner Start | Inner Stop | Outer Stop |
|---|---|---|---|---|---|---|---|---|---|---|---|
| nsv880605 | Remapped | Perfect | GRCh38.p12 | Primary Assembly | First Pass | NC_000005.10 | Chr5 | 29,286,591 | 29,289,609 | 29,461,866 | 29,466,823 |
| nsv880605 | Remapped | Perfect | GRCh37.p13 | Primary Assembly | First Pass | NC_000005.9 | Chr5 | 29,286,698 | 29,289,716 | 29,461,973 | 29,466,930 |
| nsv880605 | Submitted genomic | NCBI36 (hg18) | Primary Assembly | NC_000005.8 | Chr5 | 29,322,455 | 29,325,473 | 29,497,730 | 29,502,687 |
Variant Call Information
| Variant Call ID | Type | Sample ID | Method | Analysis | Other Calls in this Sample and Study |
|---|---|---|---|---|---|
| nssv1535564 | copy number loss | MS12266 | SNP array | SNP genotyping analysis | 58 |
Variant Call Placement Information
| Variant Call ID | Placement Type | Score | HGVS | Assembly | Reciprocity | Sequence ID | Chr | Outer Start | Inner Start | Inner Stop | Outer Stop |
|---|---|---|---|---|---|---|---|---|---|---|---|
| nssv1535564 | Remapped | Perfect | NC_000005.10:g.(29 286591_29289609)_( 29461866_29466823) del | GRCh38.p12 | First Pass | NC_000005.10 | Chr5 | 29,286,591 | 29,289,609 | 29,461,866 | 29,466,823 |
| nssv1535564 | Remapped | Perfect | NC_000005.9:g.(292 86698_29289716)_(2 9461973_29466930)d el | GRCh37.p13 | First Pass | NC_000005.9 | Chr5 | 29,286,698 | 29,289,716 | 29,461,973 | 29,466,930 |
| nssv1535564 | Submitted genomic | NC_000005.8:g.(293 22455_29325473)_(2 9497730_29502687)d el | NCBI36 (hg18) | NC_000005.8 | Chr5 | 29,322,455 | 29,325,473 | 29,497,730 | 29,502,687 |