nsv880628
- Organism: Homo sapiens
- Study:nstd71 (Xu et al. 2011)
- Variant Type:copy number variation
- Method Type:SNP array
- Submitted on:NCBI36 (hg18)
- Variant Calls:21
- Validation:Not tested
- Clinical Assertions: No
- Region Size:46,280
- Publication(s):Xu et al. 2011
Source: NCBI
- Genome View
- Variant Region Details and Evidence
- Validation Information
- Clinical Assertions
- Genotype Information
Genome View
Select assembly:Overlapping variant regions from other studies: 274 SVs from 46 studies. See in: genome view
Overlapping variant regions from other studies: 274 SVs from 46 studies. See in: genome view
Overlapping variant regions from other studies: 76 SVs from 18 studies. See in: genome view
Variant Region Placement Information
| Variant Region ID | Placement Type | Score | Assembly | Assembly Unit | Reciprocity | Sequence ID | Chr | Outer Start | Inner Start | Inner Stop | Outer Stop |
|---|---|---|---|---|---|---|---|---|---|---|---|
| nsv880628 | Remapped | Perfect | GRCh38.p12 | Primary Assembly | First Pass | NC_000004.12 | Chr4 | 155,778,484 | 155,785,260 | 155,814,287 | 155,824,763 |
| nsv880628 | Remapped | Perfect | GRCh37.p13 | Primary Assembly | First Pass | NC_000004.11 | Chr4 | 156,699,636 | 156,706,412 | 156,735,439 | 156,745,915 |
| nsv880628 | Submitted genomic | NCBI36 (hg18) | Primary Assembly | NC_000004.10 | Chr4 | 156,919,086 | 156,925,862 | 156,954,889 | 156,965,365 |
Variant Call Information
| Variant Call ID | Type | Sample ID | Method | Analysis | Other Calls in this Sample and Study |
|---|---|---|---|---|---|
| nssv1530012 | copy number loss | MS10169 | SNP array | SNP genotyping analysis | 10 |
| nssv1532659 | copy number loss | MS10802 | SNP array | SNP genotyping analysis | 73 |
| nssv1536520 | copy number loss | MS12827 | SNP array | SNP genotyping analysis | 60 |
| nssv1551306 | copy number loss | MS18847 | SNP array | SNP genotyping analysis | 113 |
| nssv1566030 | copy number loss | IS30562 | SNP array | SNP genotyping analysis | 16 |
| nssv1566271 | copy number loss | IS30635 | SNP array | SNP genotyping analysis | 38 |
| nssv1566772 | copy number loss | IS30923 | SNP array | SNP genotyping analysis | 26 |
| nssv1567655 | copy number loss | IS31137 | SNP array | SNP genotyping analysis | 84 |
| nssv1568671 | copy number loss | IS31330 | SNP array | SNP genotyping analysis | 66 |
| nssv1569953 | copy number loss | IS31758 | SNP array | SNP genotyping analysis | 44 |
| nssv1571155 | copy number loss | IS32615 | SNP array | SNP genotyping analysis | 64 |
| nssv1579819 | copy number loss | IS35181 | SNP array | SNP genotyping analysis | 111 |
| nssv1580168 | copy number loss | IS35236 | SNP array | SNP genotyping analysis | 31 |
| nssv1582700 | copy number loss | IS36103 | SNP array | SNP genotyping analysis | 17 |
| nssv1582938 | copy number loss | IS36219 | SNP array | SNP genotyping analysis | 125 |
| nssv1584023 | copy number loss | IS36787 | SNP array | SNP genotyping analysis | 45 |
| nssv1584561 | copy number loss | IS37065 | SNP array | SNP genotyping analysis | 45 |
| nssv1585265 | copy number loss | IS37393 | SNP array | SNP genotyping analysis | 16 |
| nssv1591871 | copy number loss | IS39081 | SNP array | SNP genotyping analysis | 20 |
| nssv1594126 | copy number loss | IS39716 | SNP array | SNP genotyping analysis | 40 |
| nssv1597947 | copy number loss | IS41043 | SNP array | SNP genotyping analysis | 96 |
Variant Call Placement Information
| Variant Call ID | Placement Type | Score | HGVS | Assembly | Reciprocity | Sequence ID | Chr | Outer Start | Inner Start | Inner Stop | Outer Stop |
|---|---|---|---|---|---|---|---|---|---|---|---|
| nssv1530012 | Remapped | Perfect | NC_000004.12:g.(15 5778484_155785260) _(155814287_155824 763)del | GRCh38.p12 | First Pass | NC_000004.12 | Chr4 | 155,778,484 | 155,785,260 | 155,814,287 | 155,824,763 |
| nssv1532659 | Remapped | Perfect | NC_000004.12:g.(15 5778484_155785260) _(155814287_155824 763)del | GRCh38.p12 | First Pass | NC_000004.12 | Chr4 | 155,778,484 | 155,785,260 | 155,814,287 | 155,824,763 |
| nssv1536520 | Remapped | Perfect | NC_000004.12:g.(15 5778484_155785260) _(155814287_155824 763)del | GRCh38.p12 | First Pass | NC_000004.12 | Chr4 | 155,778,484 | 155,785,260 | 155,814,287 | 155,824,763 |
| nssv1551306 | Remapped | Perfect | NC_000004.12:g.(15 5778484_155785260) _(155814287_155824 763)del | GRCh38.p12 | First Pass | NC_000004.12 | Chr4 | 155,778,484 | 155,785,260 | 155,814,287 | 155,824,763 |
| nssv1566030 | Remapped | Perfect | NC_000004.12:g.(15 5778484_155785260) _(155814287_155824 763)del | GRCh38.p12 | First Pass | NC_000004.12 | Chr4 | 155,778,484 | 155,785,260 | 155,814,287 | 155,824,763 |
| nssv1566271 | Remapped | Perfect | NC_000004.12:g.(15 5778484_155785260) _(155814287_155824 763)del | GRCh38.p12 | First Pass | NC_000004.12 | Chr4 | 155,778,484 | 155,785,260 | 155,814,287 | 155,824,763 |
| nssv1566772 | Remapped | Perfect | NC_000004.12:g.(15 5778484_155785260) _(155814287_155824 763)del | GRCh38.p12 | First Pass | NC_000004.12 | Chr4 | 155,778,484 | 155,785,260 | 155,814,287 | 155,824,763 |
| nssv1567655 | Remapped | Perfect | NC_000004.12:g.(15 5778484_155785260) _(155814287_155824 763)del | GRCh38.p12 | First Pass | NC_000004.12 | Chr4 | 155,778,484 | 155,785,260 | 155,814,287 | 155,824,763 |
| nssv1568671 | Remapped | Perfect | NC_000004.12:g.(15 5778484_155785260) _(155814287_155824 763)del | GRCh38.p12 | First Pass | NC_000004.12 | Chr4 | 155,778,484 | 155,785,260 | 155,814,287 | 155,824,763 |
| nssv1569953 | Remapped | Perfect | NC_000004.12:g.(15 5778484_155785260) _(155814287_155824 763)del | GRCh38.p12 | First Pass | NC_000004.12 | Chr4 | 155,778,484 | 155,785,260 | 155,814,287 | 155,824,763 |
| nssv1571155 | Remapped | Perfect | NC_000004.12:g.(15 5778484_155785260) _(155814287_155824 763)del | GRCh38.p12 | First Pass | NC_000004.12 | Chr4 | 155,778,484 | 155,785,260 | 155,814,287 | 155,824,763 |
| nssv1579819 | Remapped | Perfect | NC_000004.12:g.(15 5778484_155785260) _(155814287_155824 763)del | GRCh38.p12 | First Pass | NC_000004.12 | Chr4 | 155,778,484 | 155,785,260 | 155,814,287 | 155,824,763 |
| nssv1580168 | Remapped | Perfect | NC_000004.12:g.(15 5778484_155785260) _(155814287_155824 763)del | GRCh38.p12 | First Pass | NC_000004.12 | Chr4 | 155,778,484 | 155,785,260 | 155,814,287 | 155,824,763 |
| nssv1582700 | Remapped | Perfect | NC_000004.12:g.(15 5778484_155785260) _(155814287_155824 763)del | GRCh38.p12 | First Pass | NC_000004.12 | Chr4 | 155,778,484 | 155,785,260 | 155,814,287 | 155,824,763 |
| nssv1582938 | Remapped | Perfect | NC_000004.12:g.(15 5778484_155785260) _(155814287_155824 763)del | GRCh38.p12 | First Pass | NC_000004.12 | Chr4 | 155,778,484 | 155,785,260 | 155,814,287 | 155,824,763 |
| nssv1584023 | Remapped | Perfect | NC_000004.12:g.(15 5778484_155785260) _(155814287_155824 763)del | GRCh38.p12 | First Pass | NC_000004.12 | Chr4 | 155,778,484 | 155,785,260 | 155,814,287 | 155,824,763 |
| nssv1584561 | Remapped | Perfect | NC_000004.12:g.(15 5778484_155785260) _(155814287_155824 763)del | GRCh38.p12 | First Pass | NC_000004.12 | Chr4 | 155,778,484 | 155,785,260 | 155,814,287 | 155,824,763 |
| nssv1585265 | Remapped | Perfect | NC_000004.12:g.(15 5778484_155785260) _(155814287_155824 763)del | GRCh38.p12 | First Pass | NC_000004.12 | Chr4 | 155,778,484 | 155,785,260 | 155,814,287 | 155,824,763 |
| nssv1591871 | Remapped | Perfect | NC_000004.12:g.(15 5778484_155785260) _(155814287_155824 763)del | GRCh38.p12 | First Pass | NC_000004.12 | Chr4 | 155,778,484 | 155,785,260 | 155,814,287 | 155,824,763 |
| nssv1594126 | Remapped | Perfect | NC_000004.12:g.(15 5778484_155785260) _(155814287_155824 763)del | GRCh38.p12 | First Pass | NC_000004.12 | Chr4 | 155,778,484 | 155,785,260 | 155,814,287 | 155,824,763 |
| nssv1597947 | Remapped | Perfect | NC_000004.12:g.(15 5778484_155785260) _(155814287_155824 763)del | GRCh38.p12 | First Pass | NC_000004.12 | Chr4 | 155,778,484 | 155,785,260 | 155,814,287 | 155,824,763 |
| nssv1530012 | Remapped | Perfect | NC_000004.11:g.(15 6699636_156706412) _(156735439_156745 915)del | GRCh37.p13 | First Pass | NC_000004.11 | Chr4 | 156,699,636 | 156,706,412 | 156,735,439 | 156,745,915 |
| nssv1532659 | Remapped | Perfect | NC_000004.11:g.(15 6699636_156706412) _(156735439_156745 915)del | GRCh37.p13 | First Pass | NC_000004.11 | Chr4 | 156,699,636 | 156,706,412 | 156,735,439 | 156,745,915 |
| nssv1536520 | Remapped | Perfect | NC_000004.11:g.(15 6699636_156706412) _(156735439_156745 915)del | GRCh37.p13 | First Pass | NC_000004.11 | Chr4 | 156,699,636 | 156,706,412 | 156,735,439 | 156,745,915 |
| nssv1551306 | Remapped | Perfect | NC_000004.11:g.(15 6699636_156706412) _(156735439_156745 915)del | GRCh37.p13 | First Pass | NC_000004.11 | Chr4 | 156,699,636 | 156,706,412 | 156,735,439 | 156,745,915 |
| nssv1566030 | Remapped | Perfect | NC_000004.11:g.(15 6699636_156706412) _(156735439_156745 915)del | GRCh37.p13 | First Pass | NC_000004.11 | Chr4 | 156,699,636 | 156,706,412 | 156,735,439 | 156,745,915 |
| nssv1566271 | Remapped | Perfect | NC_000004.11:g.(15 6699636_156706412) _(156735439_156745 915)del | GRCh37.p13 | First Pass | NC_000004.11 | Chr4 | 156,699,636 | 156,706,412 | 156,735,439 | 156,745,915 |
| nssv1566772 | Remapped | Perfect | NC_000004.11:g.(15 6699636_156706412) _(156735439_156745 915)del | GRCh37.p13 | First Pass | NC_000004.11 | Chr4 | 156,699,636 | 156,706,412 | 156,735,439 | 156,745,915 |
| nssv1567655 | Remapped | Perfect | NC_000004.11:g.(15 6699636_156706412) _(156735439_156745 915)del | GRCh37.p13 | First Pass | NC_000004.11 | Chr4 | 156,699,636 | 156,706,412 | 156,735,439 | 156,745,915 |
| nssv1568671 | Remapped | Perfect | NC_000004.11:g.(15 6699636_156706412) _(156735439_156745 915)del | GRCh37.p13 | First Pass | NC_000004.11 | Chr4 | 156,699,636 | 156,706,412 | 156,735,439 | 156,745,915 |
| nssv1569953 | Remapped | Perfect | NC_000004.11:g.(15 6699636_156706412) _(156735439_156745 915)del | GRCh37.p13 | First Pass | NC_000004.11 | Chr4 | 156,699,636 | 156,706,412 | 156,735,439 | 156,745,915 |
| nssv1571155 | Remapped | Perfect | NC_000004.11:g.(15 6699636_156706412) _(156735439_156745 915)del | GRCh37.p13 | First Pass | NC_000004.11 | Chr4 | 156,699,636 | 156,706,412 | 156,735,439 | 156,745,915 |
| nssv1579819 | Remapped | Perfect | NC_000004.11:g.(15 6699636_156706412) _(156735439_156745 915)del | GRCh37.p13 | First Pass | NC_000004.11 | Chr4 | 156,699,636 | 156,706,412 | 156,735,439 | 156,745,915 |
| nssv1580168 | Remapped | Perfect | NC_000004.11:g.(15 6699636_156706412) _(156735439_156745 915)del | GRCh37.p13 | First Pass | NC_000004.11 | Chr4 | 156,699,636 | 156,706,412 | 156,735,439 | 156,745,915 |
| nssv1582700 | Remapped | Perfect | NC_000004.11:g.(15 6699636_156706412) _(156735439_156745 915)del | GRCh37.p13 | First Pass | NC_000004.11 | Chr4 | 156,699,636 | 156,706,412 | 156,735,439 | 156,745,915 |
| nssv1582938 | Remapped | Perfect | NC_000004.11:g.(15 6699636_156706412) _(156735439_156745 915)del | GRCh37.p13 | First Pass | NC_000004.11 | Chr4 | 156,699,636 | 156,706,412 | 156,735,439 | 156,745,915 |
| nssv1584023 | Remapped | Perfect | NC_000004.11:g.(15 6699636_156706412) _(156735439_156745 915)del | GRCh37.p13 | First Pass | NC_000004.11 | Chr4 | 156,699,636 | 156,706,412 | 156,735,439 | 156,745,915 |
| nssv1584561 | Remapped | Perfect | NC_000004.11:g.(15 6699636_156706412) _(156735439_156745 915)del | GRCh37.p13 | First Pass | NC_000004.11 | Chr4 | 156,699,636 | 156,706,412 | 156,735,439 | 156,745,915 |
| nssv1585265 | Remapped | Perfect | NC_000004.11:g.(15 6699636_156706412) _(156735439_156745 915)del | GRCh37.p13 | First Pass | NC_000004.11 | Chr4 | 156,699,636 | 156,706,412 | 156,735,439 | 156,745,915 |
| nssv1591871 | Remapped | Perfect | NC_000004.11:g.(15 6699636_156706412) _(156735439_156745 915)del | GRCh37.p13 | First Pass | NC_000004.11 | Chr4 | 156,699,636 | 156,706,412 | 156,735,439 | 156,745,915 |
| nssv1594126 | Remapped | Perfect | NC_000004.11:g.(15 6699636_156706412) _(156735439_156745 915)del | GRCh37.p13 | First Pass | NC_000004.11 | Chr4 | 156,699,636 | 156,706,412 | 156,735,439 | 156,745,915 |
| nssv1597947 | Remapped | Perfect | NC_000004.11:g.(15 6699636_156706412) _(156735439_156745 915)del | GRCh37.p13 | First Pass | NC_000004.11 | Chr4 | 156,699,636 | 156,706,412 | 156,735,439 | 156,745,915 |
| nssv1530012 | Submitted genomic | NC_000004.10:g.(15 6919086_156925862) _(156954889_156965 365)del | NCBI36 (hg18) | NC_000004.10 | Chr4 | 156,919,086 | 156,925,862 | 156,954,889 | 156,965,365 | ||
| nssv1532659 | Submitted genomic | NC_000004.10:g.(15 6919086_156925862) _(156954889_156965 365)del | NCBI36 (hg18) | NC_000004.10 | Chr4 | 156,919,086 | 156,925,862 | 156,954,889 | 156,965,365 | ||
| nssv1536520 | Submitted genomic | NC_000004.10:g.(15 6919086_156925862) _(156954889_156965 365)del | NCBI36 (hg18) | NC_000004.10 | Chr4 | 156,919,086 | 156,925,862 | 156,954,889 | 156,965,365 | ||
| nssv1551306 | Submitted genomic | NC_000004.10:g.(15 6919086_156925862) _(156954889_156965 365)del | NCBI36 (hg18) | NC_000004.10 | Chr4 | 156,919,086 | 156,925,862 | 156,954,889 | 156,965,365 | ||
| nssv1566030 | Submitted genomic | NC_000004.10:g.(15 6919086_156925862) _(156954889_156965 365)del | NCBI36 (hg18) | NC_000004.10 | Chr4 | 156,919,086 | 156,925,862 | 156,954,889 | 156,965,365 | ||
| nssv1566271 | Submitted genomic | NC_000004.10:g.(15 6919086_156925862) _(156954889_156965 365)del | NCBI36 (hg18) | NC_000004.10 | Chr4 | 156,919,086 | 156,925,862 | 156,954,889 | 156,965,365 | ||
| nssv1566772 | Submitted genomic | NC_000004.10:g.(15 6919086_156925862) _(156954889_156965 365)del | NCBI36 (hg18) | NC_000004.10 | Chr4 | 156,919,086 | 156,925,862 | 156,954,889 | 156,965,365 | ||
| nssv1567655 | Submitted genomic | NC_000004.10:g.(15 6919086_156925862) _(156954889_156965 365)del | NCBI36 (hg18) | NC_000004.10 | Chr4 | 156,919,086 | 156,925,862 | 156,954,889 | 156,965,365 | ||
| nssv1568671 | Submitted genomic | NC_000004.10:g.(15 6919086_156925862) _(156954889_156965 365)del | NCBI36 (hg18) | NC_000004.10 | Chr4 | 156,919,086 | 156,925,862 | 156,954,889 | 156,965,365 | ||
| nssv1569953 | Submitted genomic | NC_000004.10:g.(15 6919086_156925862) _(156954889_156965 365)del | NCBI36 (hg18) | NC_000004.10 | Chr4 | 156,919,086 | 156,925,862 | 156,954,889 | 156,965,365 | ||
| nssv1571155 | Submitted genomic | NC_000004.10:g.(15 6919086_156925862) _(156954889_156965 365)del | NCBI36 (hg18) | NC_000004.10 | Chr4 | 156,919,086 | 156,925,862 | 156,954,889 | 156,965,365 | ||
| nssv1579819 | Submitted genomic | NC_000004.10:g.(15 6919086_156925862) _(156954889_156965 365)del | NCBI36 (hg18) | NC_000004.10 | Chr4 | 156,919,086 | 156,925,862 | 156,954,889 | 156,965,365 | ||
| nssv1580168 | Submitted genomic | NC_000004.10:g.(15 6919086_156925862) _(156954889_156965 365)del | NCBI36 (hg18) | NC_000004.10 | Chr4 | 156,919,086 | 156,925,862 | 156,954,889 | 156,965,365 | ||
| nssv1582700 | Submitted genomic | NC_000004.10:g.(15 6919086_156925862) _(156954889_156965 365)del | NCBI36 (hg18) | NC_000004.10 | Chr4 | 156,919,086 | 156,925,862 | 156,954,889 | 156,965,365 | ||
| nssv1582938 | Submitted genomic | NC_000004.10:g.(15 6919086_156925862) _(156954889_156965 365)del | NCBI36 (hg18) | NC_000004.10 | Chr4 | 156,919,086 | 156,925,862 | 156,954,889 | 156,965,365 | ||
| nssv1584023 | Submitted genomic | NC_000004.10:g.(15 6919086_156925862) _(156954889_156965 365)del | NCBI36 (hg18) | NC_000004.10 | Chr4 | 156,919,086 | 156,925,862 | 156,954,889 | 156,965,365 | ||
| nssv1584561 | Submitted genomic | NC_000004.10:g.(15 6919086_156925862) _(156954889_156965 365)del | NCBI36 (hg18) | NC_000004.10 | Chr4 | 156,919,086 | 156,925,862 | 156,954,889 | 156,965,365 | ||
| nssv1585265 | Submitted genomic | NC_000004.10:g.(15 6919086_156925862) _(156954889_156965 365)del | NCBI36 (hg18) | NC_000004.10 | Chr4 | 156,919,086 | 156,925,862 | 156,954,889 | 156,965,365 | ||
| nssv1591871 | Submitted genomic | NC_000004.10:g.(15 6919086_156925862) _(156954889_156965 365)del | NCBI36 (hg18) | NC_000004.10 | Chr4 | 156,919,086 | 156,925,862 | 156,954,889 | 156,965,365 | ||
| nssv1594126 | Submitted genomic | NC_000004.10:g.(15 6919086_156925862) _(156954889_156965 365)del | NCBI36 (hg18) | NC_000004.10 | Chr4 | 156,919,086 | 156,925,862 | 156,954,889 | 156,965,365 | ||
| nssv1597947 | Submitted genomic | NC_000004.10:g.(15 6919086_156925862) _(156954889_156965 365)del | NCBI36 (hg18) | NC_000004.10 | Chr4 | 156,919,086 | 156,925,862 | 156,954,889 | 156,965,365 |