nsv880637
- Organism: Homo sapiens
- Study:nstd71 (Xu et al. 2011)
- Variant Type:copy number variation
- Method Type:SNP array
- Submitted on:NCBI36 (hg18)
- Variant Calls:1
- Validation:Not tested
- Clinical Assertions: No
- Region Size:601,978
- Publication(s):Xu et al. 2011
Source: NCBI
- Genome View
- Variant Region Details and Evidence
- Validation Information
- Clinical Assertions
- Genotype Information
Genome View
Select assembly:Overlapping variant regions from other studies: 2179 SVs from 93 studies. See in: genome view
Overlapping variant regions from other studies: 2179 SVs from 93 studies. See in: genome view
Overlapping variant regions from other studies: 770 SVs from 26 studies. See in: genome view
Variant Region Placement Information
| Variant Region ID | Placement Type | Score | Assembly | Assembly Unit | Reciprocity | Sequence ID | Chr | Outer Start | Inner Start | Inner Stop | Outer Stop |
|---|---|---|---|---|---|---|---|---|---|---|---|
| nsv880637 | Remapped | Perfect | GRCh38.p12 | Primary Assembly | First Pass | NC_000004.12 | Chr4 | 161,396,834 | 161,399,751 | 161,986,681 | 161,998,811 |
| nsv880637 | Remapped | Perfect | GRCh37.p13 | Primary Assembly | First Pass | NC_000004.11 | Chr4 | 162,317,986 | 162,320,903 | 162,907,833 | 162,919,963 |
| nsv880637 | Submitted genomic | NCBI36 (hg18) | Primary Assembly | NC_000004.10 | Chr4 | 162,537,436 | 162,540,353 | 163,127,283 | 163,139,413 |
Variant Call Information
| Variant Call ID | Type | Sample ID | Method | Analysis | Other Calls in this Sample and Study |
|---|---|---|---|---|---|
| nssv1579822 | copy number loss | IS35181 | SNP array | SNP genotyping analysis | 111 |
Variant Call Placement Information
| Variant Call ID | Placement Type | Score | HGVS | Assembly | Reciprocity | Sequence ID | Chr | Outer Start | Inner Start | Inner Stop | Outer Stop |
|---|---|---|---|---|---|---|---|---|---|---|---|
| nssv1579822 | Remapped | Perfect | NC_000004.12:g.(16 1396834_161399751) _(161986681_161998 811)del | GRCh38.p12 | First Pass | NC_000004.12 | Chr4 | 161,396,834 | 161,399,751 | 161,986,681 | 161,998,811 |
| nssv1579822 | Remapped | Perfect | NC_000004.11:g.(16 2317986_162320903) _(162907833_162919 963)del | GRCh37.p13 | First Pass | NC_000004.11 | Chr4 | 162,317,986 | 162,320,903 | 162,907,833 | 162,919,963 |
| nssv1579822 | Submitted genomic | NC_000004.10:g.(16 2537436_162540353) _(163127283_163139 413)del | NCBI36 (hg18) | NC_000004.10 | Chr4 | 162,537,436 | 162,540,353 | 163,127,283 | 163,139,413 |