nsv880742
- Organism: Homo sapiens
- Study:nstd71 (Xu et al. 2011)
- Variant Type:copy number variation
- Method Type:SNP array
- Submitted on:NCBI36 (hg18)
- Variant Calls:9
- Validation:Not tested
- Clinical Assertions: No
- Region Size:49,722
- Publication(s):Xu et al. 2011
Source: NCBI
- Genome View
- Variant Region Details and Evidence
- Validation Information
- Clinical Assertions
- Genotype Information
Genome View
Select assembly:Overlapping variant regions from other studies: 748 SVs from 95 studies. See in: genome view
Overlapping variant regions from other studies: 748 SVs from 95 studies. See in: genome view
Overlapping variant regions from other studies: 358 SVs from 31 studies. See in: genome view
Variant Region Placement Information
| Variant Region ID | Placement Type | Score | Assembly | Assembly Unit | Reciprocity | Sequence ID | Chr | Outer Start | Inner Start | Inner Stop | Outer Stop |
|---|---|---|---|---|---|---|---|---|---|---|---|
| nsv880742 | Remapped | Perfect | GRCh38.p12 | Primary Assembly | First Pass | NC_000004.12 | Chr4 | 160,909,586 | 160,916,563 | 160,957,840 | 160,959,307 |
| nsv880742 | Remapped | Perfect | GRCh37.p13 | Primary Assembly | First Pass | NC_000004.11 | Chr4 | 161,830,738 | 161,837,715 | 161,878,992 | 161,880,459 |
| nsv880742 | Submitted genomic | NCBI36 (hg18) | Primary Assembly | NC_000004.10 | Chr4 | 162,050,188 | 162,057,165 | 162,098,442 | 162,099,909 |
Variant Call Information
| Variant Call ID | Type | Sample ID | Method | Analysis | Other Calls in this Sample and Study |
|---|---|---|---|---|---|
| nssv1550807 | copy number loss | MS18620 | SNP array | SNP genotyping analysis | 111 |
| nssv1558974 | copy number loss | MS23670 | SNP array | SNP genotyping analysis | 55 |
| nssv1566372 | copy number loss | IS30669 | SNP array | SNP genotyping analysis | 15 |
| nssv1574223 | copy number loss | IS33531 | SNP array | SNP genotyping analysis | 18 |
| nssv1574431 | copy number loss | IS33566 | SNP array | SNP genotyping analysis | 28 |
| nssv1575912 | copy number loss | IS33839 | SNP array | SNP genotyping analysis | 63 |
| nssv1580223 | copy number loss | IS35244 | SNP array | SNP genotyping analysis | 23 |
| nssv1593666 | copy number loss | IS39475 | SNP array | SNP genotyping analysis | 20 |
| nssv1594957 | copy number loss | IS40067 | SNP array | SNP genotyping analysis | 96 |
Variant Call Placement Information
| Variant Call ID | Placement Type | Score | HGVS | Assembly | Reciprocity | Sequence ID | Chr | Outer Start | Inner Start | Inner Stop | Outer Stop |
|---|---|---|---|---|---|---|---|---|---|---|---|
| nssv1550807 | Remapped | Perfect | NC_000004.12:g.(16 0909586_160916563) _(160957840_160959 307)del | GRCh38.p12 | First Pass | NC_000004.12 | Chr4 | 160,909,586 | 160,916,563 | 160,957,840 | 160,959,307 |
| nssv1558974 | Remapped | Perfect | NC_000004.12:g.(16 0909586_160916563) _(160957840_160959 307)del | GRCh38.p12 | First Pass | NC_000004.12 | Chr4 | 160,909,586 | 160,916,563 | 160,957,840 | 160,959,307 |
| nssv1566372 | Remapped | Perfect | NC_000004.12:g.(16 0909586_160916563) _(160957840_160959 307)del | GRCh38.p12 | First Pass | NC_000004.12 | Chr4 | 160,909,586 | 160,916,563 | 160,957,840 | 160,959,307 |
| nssv1574223 | Remapped | Perfect | NC_000004.12:g.(16 0909586_160916563) _(160957840_160959 307)del | GRCh38.p12 | First Pass | NC_000004.12 | Chr4 | 160,909,586 | 160,916,563 | 160,957,840 | 160,959,307 |
| nssv1574431 | Remapped | Perfect | NC_000004.12:g.(16 0909586_160916563) _(160957840_160959 307)del | GRCh38.p12 | First Pass | NC_000004.12 | Chr4 | 160,909,586 | 160,916,563 | 160,957,840 | 160,959,307 |
| nssv1575912 | Remapped | Perfect | NC_000004.12:g.(16 0909586_160916563) _(160957840_160959 307)del | GRCh38.p12 | First Pass | NC_000004.12 | Chr4 | 160,909,586 | 160,916,563 | 160,957,840 | 160,959,307 |
| nssv1580223 | Remapped | Perfect | NC_000004.12:g.(16 0909586_160916563) _(160957840_160959 307)del | GRCh38.p12 | First Pass | NC_000004.12 | Chr4 | 160,909,586 | 160,916,563 | 160,957,840 | 160,959,307 |
| nssv1593666 | Remapped | Perfect | NC_000004.12:g.(16 0909586_160916563) _(160957840_160959 307)del | GRCh38.p12 | First Pass | NC_000004.12 | Chr4 | 160,909,586 | 160,916,563 | 160,957,840 | 160,959,307 |
| nssv1594957 | Remapped | Perfect | NC_000004.12:g.(16 0909586_160916563) _(160957840_160959 307)del | GRCh38.p12 | First Pass | NC_000004.12 | Chr4 | 160,909,586 | 160,916,563 | 160,957,840 | 160,959,307 |
| nssv1550807 | Remapped | Perfect | NC_000004.11:g.(16 1830738_161837715) _(161878992_161880 459)del | GRCh37.p13 | First Pass | NC_000004.11 | Chr4 | 161,830,738 | 161,837,715 | 161,878,992 | 161,880,459 |
| nssv1558974 | Remapped | Perfect | NC_000004.11:g.(16 1830738_161837715) _(161878992_161880 459)del | GRCh37.p13 | First Pass | NC_000004.11 | Chr4 | 161,830,738 | 161,837,715 | 161,878,992 | 161,880,459 |
| nssv1566372 | Remapped | Perfect | NC_000004.11:g.(16 1830738_161837715) _(161878992_161880 459)del | GRCh37.p13 | First Pass | NC_000004.11 | Chr4 | 161,830,738 | 161,837,715 | 161,878,992 | 161,880,459 |
| nssv1574223 | Remapped | Perfect | NC_000004.11:g.(16 1830738_161837715) _(161878992_161880 459)del | GRCh37.p13 | First Pass | NC_000004.11 | Chr4 | 161,830,738 | 161,837,715 | 161,878,992 | 161,880,459 |
| nssv1574431 | Remapped | Perfect | NC_000004.11:g.(16 1830738_161837715) _(161878992_161880 459)del | GRCh37.p13 | First Pass | NC_000004.11 | Chr4 | 161,830,738 | 161,837,715 | 161,878,992 | 161,880,459 |
| nssv1575912 | Remapped | Perfect | NC_000004.11:g.(16 1830738_161837715) _(161878992_161880 459)del | GRCh37.p13 | First Pass | NC_000004.11 | Chr4 | 161,830,738 | 161,837,715 | 161,878,992 | 161,880,459 |
| nssv1580223 | Remapped | Perfect | NC_000004.11:g.(16 1830738_161837715) _(161878992_161880 459)del | GRCh37.p13 | First Pass | NC_000004.11 | Chr4 | 161,830,738 | 161,837,715 | 161,878,992 | 161,880,459 |
| nssv1593666 | Remapped | Perfect | NC_000004.11:g.(16 1830738_161837715) _(161878992_161880 459)del | GRCh37.p13 | First Pass | NC_000004.11 | Chr4 | 161,830,738 | 161,837,715 | 161,878,992 | 161,880,459 |
| nssv1594957 | Remapped | Perfect | NC_000004.11:g.(16 1830738_161837715) _(161878992_161880 459)del | GRCh37.p13 | First Pass | NC_000004.11 | Chr4 | 161,830,738 | 161,837,715 | 161,878,992 | 161,880,459 |
| nssv1550807 | Submitted genomic | NC_000004.10:g.(16 2050188_162057165) _(162098442_162099 909)del | NCBI36 (hg18) | NC_000004.10 | Chr4 | 162,050,188 | 162,057,165 | 162,098,442 | 162,099,909 | ||
| nssv1558974 | Submitted genomic | NC_000004.10:g.(16 2050188_162057165) _(162098442_162099 909)del | NCBI36 (hg18) | NC_000004.10 | Chr4 | 162,050,188 | 162,057,165 | 162,098,442 | 162,099,909 | ||
| nssv1566372 | Submitted genomic | NC_000004.10:g.(16 2050188_162057165) _(162098442_162099 909)del | NCBI36 (hg18) | NC_000004.10 | Chr4 | 162,050,188 | 162,057,165 | 162,098,442 | 162,099,909 | ||
| nssv1574223 | Submitted genomic | NC_000004.10:g.(16 2050188_162057165) _(162098442_162099 909)del | NCBI36 (hg18) | NC_000004.10 | Chr4 | 162,050,188 | 162,057,165 | 162,098,442 | 162,099,909 | ||
| nssv1574431 | Submitted genomic | NC_000004.10:g.(16 2050188_162057165) _(162098442_162099 909)del | NCBI36 (hg18) | NC_000004.10 | Chr4 | 162,050,188 | 162,057,165 | 162,098,442 | 162,099,909 | ||
| nssv1575912 | Submitted genomic | NC_000004.10:g.(16 2050188_162057165) _(162098442_162099 909)del | NCBI36 (hg18) | NC_000004.10 | Chr4 | 162,050,188 | 162,057,165 | 162,098,442 | 162,099,909 | ||
| nssv1580223 | Submitted genomic | NC_000004.10:g.(16 2050188_162057165) _(162098442_162099 909)del | NCBI36 (hg18) | NC_000004.10 | Chr4 | 162,050,188 | 162,057,165 | 162,098,442 | 162,099,909 | ||
| nssv1593666 | Submitted genomic | NC_000004.10:g.(16 2050188_162057165) _(162098442_162099 909)del | NCBI36 (hg18) | NC_000004.10 | Chr4 | 162,050,188 | 162,057,165 | 162,098,442 | 162,099,909 | ||
| nssv1594957 | Submitted genomic | NC_000004.10:g.(16 2050188_162057165) _(162098442_162099 909)del | NCBI36 (hg18) | NC_000004.10 | Chr4 | 162,050,188 | 162,057,165 | 162,098,442 | 162,099,909 |