nsv880761
- Organism: Homo sapiens
- Study:nstd71 (Xu et al. 2011)
- Variant Type:copy number variation
- Method Type:SNP array
- Submitted on:NCBI36 (hg18)
- Variant Calls:1
- Validation:Not tested
- Clinical Assertions: No
- Region Size:46,095
- Publication(s):Xu et al. 2011
Source: NCBI
- Genome View
- Variant Region Details and Evidence
- Validation Information
- Clinical Assertions
- Genotype Information
Genome View
Select assembly:Overlapping variant regions from other studies: 356 SVs from 55 studies. See in: genome view
Overlapping variant regions from other studies: 356 SVs from 55 studies. See in: genome view
Overlapping variant regions from other studies: 130 SVs from 18 studies. See in: genome view
Variant Region Placement Information
| Variant Region ID | Placement Type | Score | Assembly | Assembly Unit | Reciprocity | Sequence ID | Chr | Outer Start | Inner Start | Inner Stop | Outer Stop |
|---|---|---|---|---|---|---|---|---|---|---|---|
| nsv880761 | Remapped | Perfect | GRCh38.p12 | Primary Assembly | First Pass | NC_000005.10 | Chr5 | 23,242,970 | 23,243,291 | 23,280,430 | 23,289,064 |
| nsv880761 | Remapped | Perfect | GRCh37.p13 | Primary Assembly | First Pass | NC_000005.9 | Chr5 | 23,243,079 | 23,243,400 | 23,280,539 | 23,289,173 |
| nsv880761 | Submitted genomic | NCBI36 (hg18) | Primary Assembly | NC_000005.8 | Chr5 | 23,278,836 | 23,279,157 | 23,316,296 | 23,324,930 |
Variant Call Information
| Variant Call ID | Type | Sample ID | Method | Analysis | Other Calls in this Sample and Study |
|---|---|---|---|---|---|
| nssv1532145 | copy number loss | MS10727 | SNP array | SNP genotyping analysis | 29 |
Variant Call Placement Information
| Variant Call ID | Placement Type | Score | HGVS | Assembly | Reciprocity | Sequence ID | Chr | Outer Start | Inner Start | Inner Stop | Outer Stop |
|---|---|---|---|---|---|---|---|---|---|---|---|
| nssv1532145 | Remapped | Perfect | NC_000005.10:g.(23 242970_23243291)_( 23280430_23289064) del | GRCh38.p12 | First Pass | NC_000005.10 | Chr5 | 23,242,970 | 23,243,291 | 23,280,430 | 23,289,064 |
| nssv1532145 | Remapped | Perfect | NC_000005.9:g.(232 43079_23243400)_(2 3280539_23289173)d el | GRCh37.p13 | First Pass | NC_000005.9 | Chr5 | 23,243,079 | 23,243,400 | 23,280,539 | 23,289,173 |
| nssv1532145 | Submitted genomic | NC_000005.8:g.(232 78836_23279157)_(2 3316296_23324930)d el | NCBI36 (hg18) | NC_000005.8 | Chr5 | 23,278,836 | 23,279,157 | 23,316,296 | 23,324,930 |