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dbVar

Database of genomic structural variation

nsv880768

Organism: Homo sapiens

Study:nstd71 (Xu et al. 2011)
Variant Type:copy number variation
Method Type:SNP array
Submitted on:NCBI36 (hg18)

Variant Calls:3
Validation:Not tested
Clinical Assertions: No
Region Size:48,168

Publication(s):Xu et al. 2011

Links to Other Resources

Overlapping Genes

Source: NCBI

Genome View
Variant Region Details and Evidence
Validation Information
Clinical Assertions
Genotype Information

Genome View

Select assembly:

Overlapping variant regions from other studies: 310 SVs from 47 studies. See in: genome view

Remapped(Score: Perfect):25,689,588-25,737,755

Variant Region Placement Information

Variant Region ID	Placement Type	Score	Assembly	Assembly Unit	Reciprocity	Sequence ID	Chr	Outer Start	Inner Start	Inner Stop	Outer Stop
nsv880768	Remapped	Perfect	GRCh38.p12	Primary Assembly	First Pass	NC_000005.10	Chr5	25,689,588	25,691,009	25,722,959	25,737,755
nsv880768	Remapped	Perfect	GRCh37.p13	Primary Assembly	First Pass	NC_000005.9	Chr5	25,689,697	25,691,118	25,723,068	25,737,864
nsv880768	Submitted genomic		NCBI36 (hg18)	Primary Assembly		NC_000005.8	Chr5	25,725,454	25,726,875	25,758,825	25,773,621

Variant Call Information

Variant Call ID	Type	Sample ID	Method	Analysis	Other Calls in this Sample and Study
nssv1536522	copy number loss	MS12827	SNP array	SNP genotyping analysis	60
nssv1541138	copy number loss	MS15199	SNP array	SNP genotyping analysis	167
nssv1552833	copy number loss	MS19634	SNP array	SNP genotyping analysis	77

Variant Call Placement Information

Variant Call ID	Placement Type	Score	HGVS	Assembly	Reciprocity	Sequence ID	Chr	Outer Start	Inner Start	Inner Stop	Outer Stop
nssv1536522	Remapped	Perfect	NC_000005.10:g.(25 689588_25691009)_( 25722959_25737755) del	GRCh38.p12	First Pass	NC_000005.10	Chr5	25,689,588	25,691,009	25,722,959	25,737,755
nssv1541138	Remapped	Perfect	NC_000005.10:g.(25 689588_25691009)_( 25722959_25737755) del	GRCh38.p12	First Pass	NC_000005.10	Chr5	25,689,588	25,691,009	25,722,959	25,737,755
nssv1552833	Remapped	Perfect	NC_000005.10:g.(25 689588_25691009)_( 25722959_25737755) del	GRCh38.p12	First Pass	NC_000005.10	Chr5	25,689,588	25,691,009	25,722,959	25,737,755
nssv1536522	Remapped	Perfect	NC_000005.9:g.(256 89697_25691118)_(2 5723068_25737864)d el	GRCh37.p13	First Pass	NC_000005.9	Chr5	25,689,697	25,691,118	25,723,068	25,737,864
nssv1541138	Remapped	Perfect	NC_000005.9:g.(256 89697_25691118)_(2 5723068_25737864)d el	GRCh37.p13	First Pass	NC_000005.9	Chr5	25,689,697	25,691,118	25,723,068	25,737,864
nssv1552833	Remapped	Perfect	NC_000005.9:g.(256 89697_25691118)_(2 5723068_25737864)d el	GRCh37.p13	First Pass	NC_000005.9	Chr5	25,689,697	25,691,118	25,723,068	25,737,864
nssv1536522	Submitted genomic		NC_000005.8:g.(257 25454_25726875)_(2 5758825_25773621)d el	NCBI36 (hg18)		NC_000005.8	Chr5	25,725,454	25,726,875	25,758,825	25,773,621
nssv1541138	Submitted genomic		NC_000005.8:g.(257 25454_25726875)_(2 5758825_25773621)d el	NCBI36 (hg18)		NC_000005.8	Chr5	25,725,454	25,726,875	25,758,825	25,773,621
nssv1552833	Submitted genomic		NC_000005.8:g.(257 25454_25726875)_(2 5758825_25773621)d el	NCBI36 (hg18)		NC_000005.8	Chr5	25,725,454	25,726,875	25,758,825	25,773,621

No validation data were submitted for this variant

No clinical assertion data were submitted for this variant

No genotype data were submitted for this variant

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