nsv880943
- Organism: Homo sapiens
- Study:nstd71 (Xu et al. 2011)
- Variant Type:copy number variation
- Method Type:SNP array
- Submitted on:NCBI36 (hg18)
- Variant Calls:1
- Validation:Not tested
- Clinical Assertions: No
- Region Size:60,179
- Publication(s):Xu et al. 2011
Source: NCBI
- Genome View
- Variant Region Details and Evidence
- Validation Information
- Clinical Assertions
- Genotype Information
Genome View
Select assembly:Overlapping variant regions from other studies: 403 SVs from 55 studies. See in: genome view
Overlapping variant regions from other studies: 403 SVs from 55 studies. See in: genome view
Overlapping variant regions from other studies: 140 SVs from 13 studies. See in: genome view
Variant Region Placement Information
| Variant Region ID | Placement Type | Score | Assembly | Assembly Unit | Reciprocity | Sequence ID | Chr | Outer Start | Inner Start | Inner Stop | Outer Stop |
|---|---|---|---|---|---|---|---|---|---|---|---|
| nsv880943 | Remapped | Perfect | GRCh38.p12 | Primary Assembly | First Pass | NC_000005.10 | Chr5 | 25,988,175 | 25,992,348 | 26,033,842 | 26,048,353 |
| nsv880943 | Remapped | Perfect | GRCh37.p13 | Primary Assembly | First Pass | NC_000005.9 | Chr5 | 25,988,284 | 25,992,457 | 26,033,951 | 26,048,462 |
| nsv880943 | Submitted genomic | NCBI36 (hg18) | Primary Assembly | NC_000005.8 | Chr5 | 26,024,041 | 26,028,214 | 26,069,708 | 26,084,219 |
Variant Call Information
| Variant Call ID | Type | Sample ID | Method | Analysis | Other Calls in this Sample and Study |
|---|---|---|---|---|---|
| nssv1566374 | copy number loss | IS30669 | SNP array | SNP genotyping analysis | 15 |
Variant Call Placement Information
| Variant Call ID | Placement Type | Score | HGVS | Assembly | Reciprocity | Sequence ID | Chr | Outer Start | Inner Start | Inner Stop | Outer Stop |
|---|---|---|---|---|---|---|---|---|---|---|---|
| nssv1566374 | Remapped | Perfect | NC_000005.10:g.(25 988175_25992348)_( 26033842_26048353) del | GRCh38.p12 | First Pass | NC_000005.10 | Chr5 | 25,988,175 | 25,992,348 | 26,033,842 | 26,048,353 |
| nssv1566374 | Remapped | Perfect | NC_000005.9:g.(259 88284_25992457)_(2 6033951_26048462)d el | GRCh37.p13 | First Pass | NC_000005.9 | Chr5 | 25,988,284 | 25,992,457 | 26,033,951 | 26,048,462 |
| nssv1566374 | Submitted genomic | NC_000005.8:g.(260 24041_26028214)_(2 6069708_26084219)d el | NCBI36 (hg18) | NC_000005.8 | Chr5 | 26,024,041 | 26,028,214 | 26,069,708 | 26,084,219 |