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dbVar

Database of genomic structural variation

nsv880953

Organism: Homo sapiens

Study:nstd71 (Xu et al. 2011)
Variant Type:copy number variation
Method Type:SNP array
Submitted on:NCBI36 (hg18)

Variant Calls:2
Validation:Not tested
Clinical Assertions: No
Region Size:263,858

Publication(s):Xu et al. 2011

Links to Other Resources

Overlapping Genes

Source: NCBI

Genome View
Variant Region Details and Evidence
Validation Information
Clinical Assertions
Genotype Information

Genome View

Select assembly:

Overlapping variant regions from other studies: 1080 SVs from 75 studies. See in: genome view

Remapped(Score: Perfect):29,315,160-29,579,017

Variant Region Placement Information

Variant Region ID	Placement Type	Score	Assembly	Assembly Unit	Reciprocity	Sequence ID	Chr	Outer Start	Inner Start	Inner Stop	Outer Stop
nsv880953	Remapped	Perfect	GRCh38.p12	Primary Assembly	First Pass	NC_000005.10	Chr5	29,315,160	29,327,804	29,574,668	29,579,017
nsv880953	Remapped	Perfect	GRCh37.p13	Primary Assembly	First Pass	NC_000005.9	Chr5	29,315,267	29,327,911	29,574,775	29,579,124
nsv880953	Submitted genomic		NCBI36 (hg18)	Primary Assembly		NC_000005.8	Chr5	29,351,024	29,363,668	29,610,532	29,614,881

Variant Call Information

Variant Call ID	Type	Sample ID	Method	Analysis	Other Calls in this Sample and Study
nssv1530069	copy number gain	MS10187	SNP array	SNP genotyping analysis	9
nssv1545480	copy number gain	MS16801	SNP array	SNP genotyping analysis	21

Variant Call Placement Information

Variant Call ID	Placement Type	Score	HGVS	Assembly	Reciprocity	Sequence ID	Chr	Outer Start	Inner Start	Inner Stop	Outer Stop
nssv1530069	Remapped	Perfect	NC_000005.10:g.(29 315160_29327804)_( 29574668_29579017) dup	GRCh38.p12	First Pass	NC_000005.10	Chr5	29,315,160	29,327,804	29,574,668	29,579,017
nssv1545480	Remapped	Perfect	NC_000005.10:g.(29 315160_29327804)_( 29574668_29579017) dup	GRCh38.p12	First Pass	NC_000005.10	Chr5	29,315,160	29,327,804	29,574,668	29,579,017
nssv1530069	Remapped	Perfect	NC_000005.9:g.(293 15267_29327911)_(2 9574775_29579124)d up	GRCh37.p13	First Pass	NC_000005.9	Chr5	29,315,267	29,327,911	29,574,775	29,579,124
nssv1545480	Remapped	Perfect	NC_000005.9:g.(293 15267_29327911)_(2 9574775_29579124)d up	GRCh37.p13	First Pass	NC_000005.9	Chr5	29,315,267	29,327,911	29,574,775	29,579,124
nssv1530069	Submitted genomic		NC_000005.8:g.(293 51024_29363668)_(2 9610532_29614881)d up	NCBI36 (hg18)		NC_000005.8	Chr5	29,351,024	29,363,668	29,610,532	29,614,881
nssv1545480	Submitted genomic		NC_000005.8:g.(293 51024_29363668)_(2 9610532_29614881)d up	NCBI36 (hg18)		NC_000005.8	Chr5	29,351,024	29,363,668	29,610,532	29,614,881

No validation data were submitted for this variant

No clinical assertion data were submitted for this variant

No genotype data were submitted for this variant

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