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dbVar

Database of genomic structural variation

nsv881360

Organism: Homo sapiens

Study:nstd71 (Xu et al. 2011)
Variant Type:copy number variation
Method Type:SNP array
Submitted on:NCBI36 (hg18)

Variant Calls:2
Validation:Not tested
Clinical Assertions: No
Region Size:175,517

Publication(s):Xu et al. 2011

Links to Other Resources

Overlapping Genes

Source: NCBI

Genome View
Variant Region Details and Evidence
Validation Information
Clinical Assertions
Genotype Information

Genome View

Select assembly:

Overlapping variant regions from other studies: 1040 SVs from 92 studies. See in: genome view

Remapped(Score: Perfect):171,394,617-171,570,133

Variant Region Placement Information

Variant Region ID	Placement Type	Score	Assembly	Assembly Unit	Reciprocity	Sequence ID	Chr	Outer Start	Inner Start	Inner Stop	Outer Stop
nsv881360	Remapped	Perfect	GRCh38.p12	Primary Assembly	First Pass	NC_000004.12	Chr4	171,394,617	171,404,102	171,566,468	171,570,133
nsv881360	Remapped	Perfect	GRCh37.p13	Primary Assembly	First Pass	NC_000004.11	Chr4	172,315,768	172,325,253	172,487,619	172,491,284
nsv881360	Submitted genomic		NCBI36 (hg18)	Primary Assembly		NC_000004.10	Chr4	172,552,343	172,561,828	172,724,194	172,727,859

Variant Call Information

Variant Call ID	Type	Sample ID	Method	Analysis	Other Calls in this Sample and Study
nssv1536521	copy number loss	MS12827	SNP array	SNP genotyping analysis	60
nssv1542292	copy number loss	MS15749	SNP array	SNP genotyping analysis	46

Variant Call Placement Information

Variant Call ID	Placement Type	Score	HGVS	Assembly	Reciprocity	Sequence ID	Chr	Outer Start	Inner Start	Inner Stop	Outer Stop
nssv1536521	Remapped	Perfect	NC_000004.12:g.(17 1394617_171404102) _(171566468_171570 133)del	GRCh38.p12	First Pass	NC_000004.12	Chr4	171,394,617	171,404,102	171,566,468	171,570,133
nssv1542292	Remapped	Perfect	NC_000004.12:g.(17 1394617_171404102) _(171566468_171570 133)del	GRCh38.p12	First Pass	NC_000004.12	Chr4	171,394,617	171,404,102	171,566,468	171,570,133
nssv1536521	Remapped	Perfect	NC_000004.11:g.(17 2315768_172325253) _(172487619_172491 284)del	GRCh37.p13	First Pass	NC_000004.11	Chr4	172,315,768	172,325,253	172,487,619	172,491,284
nssv1542292	Remapped	Perfect	NC_000004.11:g.(17 2315768_172325253) _(172487619_172491 284)del	GRCh37.p13	First Pass	NC_000004.11	Chr4	172,315,768	172,325,253	172,487,619	172,491,284
nssv1536521	Submitted genomic		NC_000004.10:g.(17 2552343_172561828) _(172724194_172727 859)del	NCBI36 (hg18)		NC_000004.10	Chr4	172,552,343	172,561,828	172,724,194	172,727,859
nssv1542292	Submitted genomic		NC_000004.10:g.(17 2552343_172561828) _(172724194_172727 859)del	NCBI36 (hg18)		NC_000004.10	Chr4	172,552,343	172,561,828	172,724,194	172,727,859

No validation data were submitted for this variant

No clinical assertion data were submitted for this variant

No genotype data were submitted for this variant

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