nsv881429
- Organism: Homo sapiens
- Study:nstd71 (Xu et al. 2011)
- Variant Type:copy number variation
- Method Type:SNP array
- Submitted on:NCBI36 (hg18)
- Variant Calls:1
- Validation:Not tested
- Clinical Assertions: No
- Region Size:148,154
- Publication(s):Xu et al. 2011
Source: NCBI
- Genome View
- Variant Region Details and Evidence
- Validation Information
- Clinical Assertions
- Genotype Information
Genome View
Select assembly:Overlapping variant regions from other studies: 814 SVs from 69 studies. See in: genome view
Overlapping variant regions from other studies: 814 SVs from 69 studies. See in: genome view
Overlapping variant regions from other studies: 373 SVs from 20 studies. See in: genome view
Variant Region Placement Information
| Variant Region ID | Placement Type | Score | Assembly | Assembly Unit | Reciprocity | Sequence ID | Chr | Outer Start | Inner Start | Inner Stop | Outer Stop |
|---|---|---|---|---|---|---|---|---|---|---|---|
| nsv881429 | Remapped | Perfect | GRCh38.p12 | Primary Assembly | First Pass | NC_000005.10 | Chr5 | 10,141,238 | 10,142,063 | 10,286,630 | 10,289,391 |
| nsv881429 | Remapped | Perfect | GRCh37.p13 | Primary Assembly | First Pass | NC_000005.9 | Chr5 | 10,141,350 | 10,142,175 | 10,286,742 | 10,289,503 |
| nsv881429 | Submitted genomic | NCBI36 (hg18) | Primary Assembly | NC_000005.8 | Chr5 | 10,194,350 | 10,195,175 | 10,339,742 | 10,342,503 |
Variant Call Information
| Variant Call ID | Type | Sample ID | Method | Analysis | Other Calls in this Sample and Study |
|---|---|---|---|---|---|
| nssv1542049 | copy number gain | MS15610 | SNP array | SNP genotyping analysis | 12 |
Variant Call Placement Information
| Variant Call ID | Placement Type | Score | HGVS | Assembly | Reciprocity | Sequence ID | Chr | Outer Start | Inner Start | Inner Stop | Outer Stop |
|---|---|---|---|---|---|---|---|---|---|---|---|
| nssv1542049 | Remapped | Perfect | NC_000005.10:g.(10 141238_10142063)_( 10286630_10289391) dup | GRCh38.p12 | First Pass | NC_000005.10 | Chr5 | 10,141,238 | 10,142,063 | 10,286,630 | 10,289,391 |
| nssv1542049 | Remapped | Perfect | NC_000005.9:g.(101 41350_10142175)_(1 0286742_10289503)d up | GRCh37.p13 | First Pass | NC_000005.9 | Chr5 | 10,141,350 | 10,142,175 | 10,286,742 | 10,289,503 |
| nssv1542049 | Submitted genomic | NC_000005.8:g.(101 94350_10195175)_(1 0339742_10342503)d up | NCBI36 (hg18) | NC_000005.8 | Chr5 | 10,194,350 | 10,195,175 | 10,339,742 | 10,342,503 |