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dbVar

Database of genomic structural variation

nsv881457

Organism: Homo sapiens

Study:nstd71 (Xu et al. 2011)
Variant Type:copy number variation
Method Type:SNP array
Submitted on:NCBI36 (hg18)

Variant Calls:4
Validation:Not tested
Clinical Assertions: No
Region Size:130,728

Publication(s):Xu et al. 2011

Links to Other Resources

Overlapping Genes

Source: NCBI

Genome View
Variant Region Details and Evidence
Validation Information
Clinical Assertions
Genotype Information

Genome View

Select assembly:

Overlapping variant regions from other studies: 2143 SVs from 104 studies. See in: genome view

Remapped(Score: Pass):17,599,468-17,730,195

Variant Region Placement Information

Variant Region ID	Placement Type	Score	Assembly	Assembly Unit	Reciprocity	Sequence ID	Chr	Outer Start	Inner Start	Inner Stop	Outer Stop
nsv881457	Remapped	Pass	GRCh38.p12	Primary Assembly	First Pass	NC_000005.10	Chr5	17,599,468	17,599,468	17,730,195	17,730,195
nsv881457	Remapped	Pass	GRCh37.p13	Primary Assembly	First Pass	NC_000005.9	Chr5	17,599,577	17,599,577	17,730,304	17,730,304
nsv881457	Submitted genomic		NCBI36 (hg18)	Primary Assembly		NC_000005.8	Chr5	17,642,680	17,671,545	17,762,815	17,766,033

Variant Call Information

Variant Call ID	Type	Sample ID	Method	Analysis	Other Calls in this Sample and Study
nssv1521701	copy number gain	SP52552	SNP array	SNP genotyping analysis	15
nssv1563832	copy number loss	IS30084	SNP array	SNP genotyping analysis	5
nssv1566373	copy number loss	IS30669	SNP array	SNP genotyping analysis	15
nssv1576497	copy number loss	IS34081	SNP array	SNP genotyping analysis	10

Variant Call Placement Information

Variant Call ID	Placement Type	Score	HGVS	Assembly	Reciprocity	Sequence ID	Chr	Outer Start	Inner Start	Inner Stop	Outer Stop
nssv1521701	Remapped	Pass	NC_000005.10:g.(17 599468_17599468)_( 17730195_17730195) dup	GRCh38.p12	First Pass	NC_000005.10	Chr5	17,599,468	17,599,468	17,730,195	17,730,195
nssv1563832	Remapped	Pass	NC_000005.10:g.(17 599468_17599468)_( 17730195_17730195) del	GRCh38.p12	First Pass	NC_000005.10	Chr5	17,599,468	17,599,468	17,730,195	17,730,195
nssv1566373	Remapped	Pass	NC_000005.10:g.(17 599468_17599468)_( 17730195_17730195) del	GRCh38.p12	First Pass	NC_000005.10	Chr5	17,599,468	17,599,468	17,730,195	17,730,195
nssv1576497	Remapped	Pass	NC_000005.10:g.(17 599468_17599468)_( 17730195_17730195) del	GRCh38.p12	First Pass	NC_000005.10	Chr5	17,599,468	17,599,468	17,730,195	17,730,195
nssv1521701	Remapped	Pass	NC_000005.9:g.(175 99577_17599577)_(1 7730304_17730304)d up	GRCh37.p13	First Pass	NC_000005.9	Chr5	17,599,577	17,599,577	17,730,304	17,730,304
nssv1563832	Remapped	Pass	NC_000005.9:g.(175 99577_17599577)_(1 7730304_17730304)d el	GRCh37.p13	First Pass	NC_000005.9	Chr5	17,599,577	17,599,577	17,730,304	17,730,304
nssv1566373	Remapped	Pass	NC_000005.9:g.(175 99577_17599577)_(1 7730304_17730304)d el	GRCh37.p13	First Pass	NC_000005.9	Chr5	17,599,577	17,599,577	17,730,304	17,730,304
nssv1576497	Remapped	Pass	NC_000005.9:g.(175 99577_17599577)_(1 7730304_17730304)d el	GRCh37.p13	First Pass	NC_000005.9	Chr5	17,599,577	17,599,577	17,730,304	17,730,304
nssv1521701	Submitted genomic		NC_000005.8:g.(176 42680_17671545)_(1 7762815_17766033)d up	NCBI36 (hg18)		NC_000005.8	Chr5	17,642,680	17,671,545	17,762,815	17,766,033
nssv1563832	Submitted genomic		NC_000005.8:g.(176 42680_17671545)_(1 7762815_17766033)d el	NCBI36 (hg18)		NC_000005.8	Chr5	17,642,680	17,671,545	17,762,815	17,766,033
nssv1566373	Submitted genomic		NC_000005.8:g.(176 42680_17671545)_(1 7762815_17766033)d el	NCBI36 (hg18)		NC_000005.8	Chr5	17,642,680	17,671,545	17,762,815	17,766,033
nssv1576497	Submitted genomic		NC_000005.8:g.(176 42680_17671545)_(1 7762815_17766033)d el	NCBI36 (hg18)		NC_000005.8	Chr5	17,642,680	17,671,545	17,762,815	17,766,033

No validation data were submitted for this variant

No clinical assertion data were submitted for this variant

No genotype data were submitted for this variant

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